BoB is a collaborative assistant for biocuration developed by IHMC together with University of Rochester, Harvard School of Medicine, SIFT, and others. The project is funded by DARPA under the Communication with Computers (CwC) program.

This git repo is a mirror of the TRIPS bob CVS module. It is updated manually when we feel the system is relatively stable.

The repo contains several libraries with their own FOSS licenses:

• The src/config/lisp/defsystem/defsystem-3.6i/ directory contains a modified, non-standard, non-official version of MK:DEFSYSTEM 3.6i. See the comments near the top of defsystem.lisp in that directory for its copyright notice and license.
• src/Conceptualizer/json-simple-1.1.1.jar is from json-simple, which uses the Apache License 2.0 (see licenses/apache-software-license.txt).
• src/Conceptualizer/jblas-1.2.3.jar is from jblas, which uses a 3-clause BSD license (see licenses/jblas-license.txt).

The rest of the repository is licensed using the GPL 2+ (see licenses/gpl-2.0.txt):

TRIPS BoB system
Copyright (C) 2016 Institute for Human & Machine Cognition

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.