Embeddable genomic visualization component based on the Integrative Genomics Viewer

🤖⚡ 50 scikit-learn tips

Jupyter notebooks from the scikit-learn video series

Python-based research interface for blackbox and hyperparameter optimization, based on the internal Google Vizier Service.

Bayesian optimisation & Reinforcement Learning library developed by Huawei Noah's Ark Lab

This repository is meant to store the code examples used in articles posted on www.insidelearningmachines.com. Each article on the website will have an associated jupyter notebook here with the sam…

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…

a set of SKILLS.md for doing bioinformatics with agents like claude code

ROSE: RANK ORDERING OF SUPER-ENHANCERS

a snakemake pipeline to process ChIP-seq files from GEO or in-house

Scripts for the analysis of TT-seq and DRB/TT-seq data.

Quantification of transposable element expression using RNA-seq

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Software for Quantifying Interspersed Repeat Expression

A flexible and feature-rich NR-seq data processing pipeline

RNA edit detection (SAILOR) and peak calling (FLARE)

Bullseye analysis pipeline for DART-seq analysis

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Open source code for AlphaFold 2.

Intro to ChIPseq using HPC

GitKraken lesson (forked from HBS-RCS)

Materials for short, half-day workshops

omniCLIP is a CLIP-Seq peak caller

📈SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.