Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

forking to have copy of my code under my name

R Scripts, Jupyter Notebooks, Conda Environments for Jacob et al. 2023 (Developmental Cell)

Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2…

🗂️A file list/WebDAV program that supports multiple storages, powered by Gin and Solidjs. / 一个支持多存储的文件列表/WebDAV程序，使用 Gin 和 Solidjs。

Easy Docker setup for Stable Diffusion with user-friendly UI

AutoRAG: An Open-Source Framework for Retrieval-Augmented Generation (RAG) Evaluation & Optimization with AutoML-Style Automation

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

iterative clustering pipeline of big single cell datasets.

Spatial transcriptomics of heart tissue

TF MOtif Discovery from Importance SCOres

Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma

Conditional Transformer Language Model for Controllable Generation

Official release of the ProGen models

Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

TCR and BCR assembly from RNA-seq data

SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.

Codes used in pan-T cell analysis

kuenm: An R package for detailed calibration and construction of Maxent Ecological Niche Models.