Stars
Curated collection of exemplary claude.md files and onboarding patterns from public GitHub projects. Includes analyses, best practices, and templates to help developers create effective AI onboardi…
Pure Numpy Implementation of the Coherent Point Drift Algorithm
A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
Wrappers around dask-jobqueue functions for specific clusters
Pydantic models for BigStitcher metadata.
Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
Real-time Claude Code usage monitor with predictions and warnings
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
A portal for viewing FIB-SEM datasets
Dask deployment for the Janelia Compute Cluster
Morphological snakes for image segmentation and tracking
Tools for distributed alignment of massive images
WebGL-based viewer for volumetric data
A collaborative benchmarking and optimization effort from NSF-NCAR, Development Seed, and NVIDIA to accelerate data-intensive geoscience AI/ML workflows using GPU-native technologies like Zarr v3, …
Burn is a next generation tensor library and Deep Learning Framework that doesn't compromise on flexibility, efficiency and portability.
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
Command-line tool for Kysely, Knex-compatible, works in Node.js, Deno, Bun, etc.
Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for training 2D and 3D models, workflows for prediction and post…
Utility for visualizing results 'on the fly' in neuroglancer
A pilot experiment to dissminate information about Janelia's biomaging data formats.
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.