Lists (11)
Starred repositories
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Rust port of Narthex — a safety layer for Claude Code hooks and MCP tools.
LLM inference server with continuous batching & SSD caching for Apple Silicon — managed from the macOS menu bar
Get up and running with Kimi-K2.5, GLM-5, MiniMax, DeepSeek, gpt-oss, Qwen, Gemma and other models.
A collection of DESIGN.md files inspired by popular brand design systems. Drop one into your project and let coding agents generate a matching UI.
Program for positive genetic identification and IBD detection from low-coverage sequencing data
A format specification for describing a visual identity to coding agents. DESIGN.md gives agents a persistent, structured understanding of a design system.
'afm' command cli: macOS server and single prompt mode that exposes Apple's Foundation and MLX Models and other APIs running on your Mac through a single aggregated OpenAI-compatible API endpoint. …
Open-source intelligence for the global theater. Track everything from the corporate/private jets of the wealthy, and spy satellites, to seismic events in one unified interface. Hook an AI agent up…
Nextflow pipeline to process long read ONT and/or pacbio HiFi data
Selection outlier scan with population branch statistic
Python package for detecting positive selective sweeps using time-series genomics sampling data.
A snakemake pipeline for statistical phasing of rare variants with Shapeit5
Manage your dotfiles across multiple diverse machines, securely.
A set of tools to calculate Rare Allele Sharing statistics.
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies