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Starred repositories

95 stars written in R
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Friends don't let friends make certain types of data visualization - What are they and why are they bad.

R 6,909 281 Updated Sep 3, 2025

Enhancing {ggplot2} plots with statistical analysis 📊📣

R 2,141 203 Updated Oct 13, 2025

Repository for Programming Assignment 2 for R Programming on Coursera

R 872 143,983 Updated Aug 14, 2024

A list of scRNA-seq analysis tools

R 752 166 Updated Oct 7, 2025

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

R 510 101 Updated Nov 3, 2025

High dimensional weighted gene co-expression network analysis

R 441 46 Updated Oct 23, 2025

R package for integrating and analyzing multiple single-cell datasets

R 421 79 Updated Nov 3, 2025

Fast Gene Set Enrichment Analysis

R 420 72 Updated Nov 7, 2025

R package implementation of Milo for testing for differential abundance in KNN graphs

R 400 24 Updated Sep 4, 2025

A toolkit for single-cell immune profiling

R 354 65 Updated Nov 6, 2025

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

R 310 49 Updated Apr 23, 2024

Interpretation of cell states using reference single-cell maps

R 298 32 Updated Aug 7, 2025

Download de dados do DataSUS e pré-processamento no R.

R 280 66 Updated Sep 26, 2025

Multi-subject Single Cell Deconvolution

R 275 117 Updated Mar 4, 2024

R package to infer biological activities from omics data using a collection of methods.

R 273 28 Updated Mar 12, 2025

Tools to work with variant call format files

R 264 54 Updated Oct 24, 2025

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

R 258 59 Updated Nov 4, 2025

Tools and methods for analysis of single cell assay data in R

R 256 57 Updated Oct 17, 2025

Visualization of Functional Enrichment Result

R 248 73 Updated Nov 6, 2025

🎯 ChIP peak Annotation, Comparison and Visualization

R 242 77 Updated Nov 4, 2025

Visualise Clusterings at Different Resolutions

R 240 15 Updated Jun 21, 2025

Authentication and Administration for Shiny apps

R 235 37 Updated Mar 20, 2025

Simple simulation of single-cell RNA sequencing data

R 231 60 Updated Nov 1, 2025

Gene set variation analysis

R 230 41 Updated Nov 8, 2025

R package for "sum of single effects" regression.

R 230 54 Updated Nov 8, 2025

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

R 226 123 Updated Jun 1, 2024

Genomic Data Retrieval with R

R 224 29 Updated Jul 19, 2025

R package to integrate rdocumentation.org into your R workflow

R 214 125 Updated Aug 22, 2024

Methods for detecting doublets in single-cell sequencing data

R 213 19 Updated Oct 23, 2025

Clone of the Bioconductor repository for the SingleR package.

R 196 20 Updated Oct 19, 2025
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