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Histopathology Feature Extractors (2024)

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

Ressources of histopathology datasets

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Single cell type annotation guided by cell atlases, with freedom to be queer

Benchmarking analysis of data integration tools

A tool for semi-automatic cell type classification

A list of scRNA-seq analysis tools

Code used to benchmark Xenium

A novel machine learning pipeline to analyse spatial transcriptomics data

This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomics analysis.

AI companions with memory: a lightweight stack to create and host your own AI companions

Applied Deep Learning Course