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    22 repositories

    • MHC-Diff

      Public
      MHC-Diff: Equivariant Diffusion Model for generating peptide-MHC structures
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Jul 21, 2026Jul 21, 2026

    • imgt_renumber

      Public
      renumber TCR and antibody PDB/mmCIF files with IMGT numbering
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • swifttcr

      Public
      SwifTCR is a computational tool for 3D modeling of the interactions between T-cell receptors (TCRs) and peptide–MHC (pMHC) complexes
      computational3d-modelsimmunoinformatics
      computational3d-modelsimmunoinformaticstcr-pmhc-binding
      Python
      •
      Apache License 2.0
      •0•4•15•0•Updated Jun 9, 2026Jun 9, 2026

    • swiftmhc-inference

      Public
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Apr 14, 2026Apr 14, 2026

    • PANDORA

      Public
      MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
      Python
      •
      Apache License 2.0
      •5•32•18•0•Updated Feb 16, 2026Feb 16, 2026

    • TCRpMHC_haddock_refine

      Public
      Sanna Eerden and Farnzahe Meimandi Parizi's pipeline for refining and ranking TCRpMHC complexes. Refined for IMMREP and wrapped up by Dario Marzella
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • awesome-TCRpMHC

      Public
      Collection of links and descriptions of useful tools, softwares and webpages to handle TCR, pMHC and TCR-pMHC structures and sequences
      0•1•0•0•Updated Dec 3, 2025Dec 3, 2025

    • position-encoding

      Public
      utility library for position encoding in torch
      Python
      •
      Apache License 2.0
      •1•0•1•0•Updated Oct 1, 2025Oct 1, 2025

    • csi

      Public
      CSI website
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • Sidechain-auto-encoder

      Public
      Python
      •3•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • AF3benchmark

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 21, 2025May 21, 2025

    • csi2025

      Public
      HTML
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • home

      Public
      0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • pmhc-diffusion-model

      Public
      Code to build diffusion models for pMHC structural data
      Python
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • tcrseq

      Public
      lookup the TCR sequence, given the gene names and CDR3 sequence
      Python
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • Logo

      Public
      Group logo
      HTML
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • .github

      Public
      Group description, projects and open positions
      Apache License 2.0
      •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • GradPose

      Public
      Python
      •
      Apache License 2.0
      •1•2•0•0•Updated Jun 27, 2023Jun 27, 2023

    • PANDORA_database

      Public
      Database for PANDORA, including .pkl database object, template structures and reference MHC sequences
      Apache License 2.0
      •0•1•0•1•Updated Nov 14, 2022Nov 14, 2022

    • PyMOL_tutorials

      Public
      Collections of pymol tutorial that came in handy for our lab
      Apache License 2.0
      •0•0•0•0•Updated Jun 21, 2022Jun 21, 2022

    • DL_tutorials_2020

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•1•0•0•Updated Nov 13, 2021Nov 13, 2021

    • bash_utils

      Public
      handy bash utils
      MIT License
      •0•0•0•0•Updated Jan 22, 2020Jan 22, 2020
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