Stars
Software for estimating genome-wide genealogies for thousands of samples
Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.
A curated list of awesome Claude Skills, resources, and tools for customizing Claude AI workflows
My Python scripts to make high-quality figures for publications in top AI conferences and journals.
This guide shares practical lessons from a fellow PhD student, helping you navigate your research journey smoothly and focus on what truly matters.
FLAMES: Accurate gene prioritization in GWAS loci
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
set of scripts and pipelines to work with QTL results
A collection of commonly used resources for complex trait genetics.
A collection of commonly used formats for quick lookup.
Visualization of Colocalization Between eQTL and GWAS Data
A powerful TWAS framework leveraging summary-level reference data
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire geno…
LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/