#!/bin/bash

# ijview: a script for displaying an image file in ImageJ

# using the Bio-Formats Importer plugin

# Required JARs: loci_tools.jar, ij.jar

# JAR libraries must be in the same directory as this

# command line script for the command to function.

# If you are a developer working from source and have

# the LOCI classes in your CLASSPATH, you can set the

# LOCI_DEVEL environment variable to use them instead.

PROG=loci.plugins.in.Importer

DIR=`dirname "$0"`

if [ $LOCI_DEVEL ]

then

java -mx512m $PROG "$@"

elif [ -e "$DIR/ij.jar" ] && \

([ -e "$DIR/loci_tools.jar" ] || [ -e "$DIR/loci_plugins.jar" ])

then

java -mx512m -cp "$DIR":"$DIR/loci_plugins.jar":"$DIR/loci_tools.jar":"$DIR/ij.jar" $PROG "$@"

else

echo "Required JAR libraries not found. Please download:"

echo " loci_tools.jar"

echo "from:"

echo " http://www.openmicroscopy.org/site/products/bio-formats/downloads"

echo "and:"

echo " ij.jar"

echo "from:"

echo " http://rsb.info.nih.gov/ij/upgrade/"

echo "and place in the same directory as the command line tools."

fi