Autonomous Research Manuscript Skills — domain-agnostic pipeline for academic paper production with Claude Code

An opinionated, agentic life-OS for Claude Code — a markdown vault with daily/weekly/quarterly review skills baked in. Includes the feedback layer most templates skip.

Local-first code intelligence graph for MCP and CLI. Builds a persistent map of your codebase so AI coding tools read only what matters, with benchmarked context reductions on reviews and large-rep…

Numerical Linear Algebra Notes CME 302 Stanford

iMRMC: Software to do multi-reader multi-case analysis of reader studies

A reasonable way to allow AI to work with reference managers

A children's alphabet book

Summarize a paper with the FOCUS method

Paper2Agent is a multi-agent AI system that automatically transforms research papers into interactive AI agents with minimal human input.

Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

A professionally curated list of awesome Conformal Prediction videos, tutorials, books, papers, PhD and MSc theses, articles and open-source libraries.

Watercolor earth Quarto reveal.js theme

A Python/R package for fitting linear mixed models for genome-wide association studies among related individuals

Scripts used for the analyses in out paper, "Bias correction for inverse variance weighting Mendelian randomization"

R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples

Debiased Inverse-Variance Weighted Estimator in Two-Sample Summary-Data Mendelian Randomization

A curated list of awesome R packages, frameworks and software.

Lecture Notes on Design & Analysis of Experiments

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Lecture notes for the "Randomised and Advanced algorithms" class developed for the University of Sydney.

R package to estimate kinship and FST from SNP data

Supplement to popkin package

Training material for the GWAS Catalog REST API workshop

Simulate GWAS data from an arbitrary DAG

A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.

A topic-centric list of HQ open datasets.

A list of awesome tools for complex trait genetics.

A workshop on writing good scientific/research code: reproducible, re-traceable, readable, extendable, and well-documented.