Code for implementing the precision functional mapping (PFM) routine

Analysis code for Sun et al., 2026

Complex-valued slab fMRI preprocessing pipeline built on nipype and fmriprep

Matlab rDCM toolbox

multi atlas transfer tools for neuroimaging (maTT)

Permutation inference for Canonical Correlation Analysis

This repository covers our developed algorithms and techniques for dynamic brain connectivity analysis.

Core tools for Cocoan Lab

Code for Yang, et al., 2020, "Reliability of dynamic network reconfiguration: impact of code implementation, parameter selection, scan duration, and task condition."

tutorial and example scripts for implementing inverted encoding model analysis framework

Behavioral and processed fMRI data and analysis codes: Large-scale neural dynamics in a shared low-dimensional state space reflect cognitive and attentional dynamics

A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond

A Python package for probabilistic state space modeling with JAX

Custom Matlab code that may (or may not) be useful

Random snippets of useful and not-so-useful code.

lipsia3.0

Code for running simulations and data analysis from: Cole MW, Ito T, Schultz D, Mill R, Chen R, Cocuzza C (2019). "Task activations produce spurious but systematic inflation of task functional con…

Automatic Segmentation of Hippocampal Subfields

Scripts on Matlab to facilitate the fMRI data processing using SPM12 software

Just small functions for preprocessing, analysis, etc. of fMRI data.

Simple toolbox for fitting the ex-Gaussian distribution to response time data

A toolbox for accurate single-trial estimates in fMRI time-series data

A little word cloud generator in Python