For setting up a living dataset

Create web-based user interfaces with Python. The nice way.

CFDE Data Distillery Partnership Project

Bioinformatic tool for Splice site Strength Estimation using RNA-seq

R Client for access to multiple data repository services

Aggregate results from bioinformatics analyses across many samples into a single report.

An R package for creating publication-ready forest plots.

Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)

Unified biological sequence manipulation in Python

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

Accurate and flexible loops calling tool for 3D genomic data.

A curated and summarized list of bioinformatics bench-marking papers and resources.

Data and code behind the articles and graphics at FiveThirtyEight

Technology agnostic long read analysis pipeline for transcriptomes

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

Full-Length Alternative Isoform analysis of RNA

Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening

nucleosome calling using ATAC-seq

conda recipes for genomic data

Library of snakemake rules.

Reporting of Custom Analysis

Simple tool to consume Amazon's Glacier AWS service

UNDER CONSTRUCTION

OpenCV and Python test