Benchmarking methods for adaptive immune receptor repertoire based predictions

Reimplementation of the Mal-ID repertoire classification method by Zaslavsky et al [repo maximz/malid]

SHIVER: Mutation-Aware BERT-style language model for human memory B-Cell receptor sequences.

Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready curation of the Protein Data Bank (PDB) for NANOBODY® VHH and…

Official repository for the Boltz biomolecular interaction models

[TMLR 2025] Decoupled Sequence and Structure Generation for Realistic Antibody Design

Compute generation probabilities of CDR3 amino acid and nucleotide sequences

CLIP-based model for aligning epitopes to immune receptors

An antibody-specific language model focusing on NGL prediction

Protein language model customized for antibodies

Random walk unit with memory

Resources for the BioML Challenge 2024: Bits to Binders

Predictor of TCR-epitope interactions

Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"

Large language modeling applied to T-cell receptor (TCR) sequences.

AbLang: A language model for antibodies

Convenience Python APIs for antibody numbering using ANARCI

Fragment-based Molecular Expansion

DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design

Efficient evolution from protein language models