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Copy pathtest-pfam.sh
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15 lines (15 loc) · 854 Bytes
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#############################################################################
# 1. Test pfam domain track in variants table
#############################################################################
echo " domain.t01...\c"
echo "chr1 30859 30860 None
chr1 69269 69270 7tm_1
chr1 69510 69511 7tm_1
chr1 874815 874816 None
chr1 879675 879676 None
chr1 935491 935492 None
chr1 1334051 1334057 None
chr1 31896607 31896608 Serinc" > exp
gemini query -q "select chrom, start, end, pfam_domain from variants" test3.snpeff.db > obs
check obs exp
rm obs exp