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Tools for working with hierarchical heterogeneity mmcif models
Examples and descriptions related to mmcif Encoding of hierarchical heterogeneity.
libLBFGS: a library of Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS)
Convert PDF to markdown + JSON quickly with high accuracy
Framework for modified sampling from biomolecular generative models
Library for reducing tail latency in RAM reads
Systemic Evolutionary Chemical Space Exploration for Drug Discovery
C library for finding and handling crystal symmetries
MacOS screen saver displaying random books on Project Gutenberg
Widget to read/write/navigate embedded notes in protein structures
Fast Volume Alignment by Frequency-Marched Newton
Images and text transcripts of the correspondence between John Backus and Edsger Dijkstra, 1978-1979. Ref: https://medium.com/@acidflask/this-guys-arrogance-takes-your-breath-away-5b903624ca5f#.j6x…
An offline-first scientific writing workspace powered by Claude. LaTeX + Python + 100+ scientific skills all running locally.
95% token savings. 155x faster queries. 16 languages. LLMs can't read your entire codebase. TLDR extracts structure, traces dependencies, and gives them exactly what they need.
Agent skill that generates rich HTML pages or slide decks for diagrams, diff reviews, plan audits, data tables, and project recaps
modular Python packages for cryo-EM and cryo-ET
Particle extraction and reconstruction from OME-Zarr tilt series.
copy pasting in terminal with vimium/vimperator like hints.
An implementation of chunked, compressed, N-dimensional arrays for Python.
Seamless operability between C++11 and Python
A high-throughput and memory-efficient inference and serving engine for LLMs