Lists (7)
Stars
A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.
Supporting code for the microsatellite genotyping paper introducing CHIIMP
MMseqs2: ultra fast and sensitive search and clustering suite
A Rust CLI to manage your data analysis projects in a simple and streamlined way, getting reproducibility for free.
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …
fastq2bcl convert fastq files in a bcl2fastq-able run directory.
Tools for annotation, processing and ML for antibody sequences
Tool to build a panel of Y-STRs markers starting from WGS samples and a Y chromosome reference.
T/B cell receptor sequencing analysis notes
Sequencing Data for Steichen et al, Science 2019
Data management framework for Python that provides functionality to describe, extract, validate, and transform tabular data
Efficient evolution from protein language models
Sapiens is a human antibody language model based on BERT.
Ancestral lineage reconstruction using BEAST or RevBayes
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
R Shiny tool to interactively visualize and analyze antibody repertoires