Paper and materials for the paper "Understanding the stochastic partial differential equation approach to smoothing"

This repository describes the structure of the MEDITS data and supports the preparation of biological data for the use in SDM models.

Dev stuff for ICES WKFISHDISH

Estimating animal movement with advection–diffusion models

Workshop on Fish Distribution 3 (WKFISHDISH3​)

Extra functions for DTUAqua's DATRAS R package.

Data-poor fish stock assessment using the single species, size structured, steady state model

Tools for creating operating models and running closed-loop simulations

Open source tools for management strategy evaluation and risk assessment for fisheries

Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)

An R package for stock-assessment simulation with Stock Synthesis

Fast and convenient maximum likelihood estimation for latent Markov models like HMMs, HSMMs, SSMs and point processes

Fish distribution stuff

🐟 A reproducible data synopsis report for over 100 species of British Columbia groundfish

EMISR package

Code for fitting the SDMs used in the 2023 EFH Five-Year Review

Digital planner for Supernote and ReMarkable // Support Ukraine 🇺🇦 https://savelife.in.ua/en/

R bindings to TMB

An R package for spatial and spatiotemporal GLMMs with TMB

AD computation with Template Model Builder (TMB)

Tool to derive objective priors for r, shape and Generation Time

DLMtool: management strategy evalaution and implementation of data-limited fishery stock assessment methods

❗ This is a read-only mirror of the CRAN R package repository. TropFishR — Tropical Fisheries Analysis. Homepage: https://github.com/tokami/TropFishR Report bugs for this package: https://github.co…

A new methodology for length frequency analysis

Scripts for the Rosa Lee paper

FLIBM is individual-based model for the simulation of fish stock dynamics

A generic size-structured stock assessment model