Lists (2)
Starred repositories
Materials for short, half-day workshops
PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure
BulkFormer: A large-scale foundation model for human bulk transcriptomes
Research code accompanying AlphaGenome
A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
Benchmark gene representations from different model families
Benchmarking gene embeddings on single, paired, and gene set tasks
PertAdapt: Unlocking Single-Cell Foundation Models for Genetic Perturbation Prediction via Condition-Sensitive Adaptation.
A Knowledge Graph for Relational Learning On Biological Data
Jupyter widget to interactively view molecular structures and trajectories
Collection of open source software projects in which members of the Faculty of Computer Science at TU Dresden are involved.
dN/dS methods to quantify selection in cancer and somatic evolution
A computational approach for identifying cancer driver genes by detecting three-dimensional clusters of somatic missense mutations in protein structures.
Learning pipeline to identify somatic SNVs under positive selection.
A deep-learning framework for multi-omics integration
Parsing tools for GTF (gene transfer format) files
a framework for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients.
Simulation platform for general-purpose robotics & embodied AI learning.
CADD scripts release for offline scoring. For more information about CADD, please visit our website
Edge representation learning library
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants