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BIBM Workshops 2011: Atlanta, GA, USA
- 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011, Atlanta, GA, USA, November 12-15, 2011. IEEE Computer Society 2011, ISBN 978-1-4577-1612-6
Workshop on Next-generation Sequencing Analysis
- Junbo Duan, Ji-Gang Zhang, John Lefante, Hong-Wen Deng, Yu-Ping Wang:
Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization. 3-12 - Ruben Cruz Huacarpuma, Maristela Holanda
, Maria Emília M. T. Walter
A conceptual data model for transcriptome project pipeline. 13-18 - (Zhou) Bryan Bai, Stefan C. Kremer:
Regularization of sequence data for machine learning. 19-25 - Zhiyu Zhao, Tin Chi Nguyen
SPATA: A seeding and patching algorithm for de novo transcriptome assembly. 26-33 - Francesco Abate, Andrea Acquaviva, Elisa Ficarra
A novel framework for chimeric transcript detection based on accurate gene fusion model. 34-41 - Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo
A fragment based alignment in linear space. 42-49 - Po-Yen Wu, John H. Phan, Fengfeng Zhou
Evaluation of normalization methods for RNA-Seq gene expression estimation. 50-57
Workshop on Computational Advances in Molecular Epidemiology (CAME 2011)
- Sergei L. Kosakovsky Pond:
Computational analysis of HIV-1 evolution and epidemiology. 60-63 - David S. Campo
Network of coordinated substitutions in the Hepatitis B virus polymerase. 64-71 - Irina V. Astrakhantseva, David S. Campo
Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection. 72-78 - Zoya Dimitrova, David S. Campo
Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. 79-86 - Arthi Ramachandran, Mariann Micsinai, Itsik Pe'er:
CONDEX: Copy number detection in exome sequences. 87-93 - Nicholas Mancuso, Bassam Tork, Pavel Skums, Ion I. Mandoiu
Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads. 94-101 - James Lara, John E. Tavis, Maureen J. Donlin
Host-specific HCV evolution and response to the combined interferon and ribavirin therapy. 102-109 - James Lara, Yuri Khudyakov:
Modeling antigenic property of the hepatitis C virus NS3 protein. 110-117 - Serghei Mangul, Adrian Caciula, Ion I. Mandoiu
RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes. 118-123 - Kristin P. Bennett, Cagri Ozcaglar, Janani Ranganathan, Srivatsan Raghavan, Jacob Katz, Dan Croft, Bülent Yener, Amina Shabbeer:
Visualization of tuberculosis patient and Mycobacterium tuberculosis complex genotype data via host-pathogen maps. 124-129 - Austin Huang, Rami Kantor, Allison DeLong, Leeann Schreier, Sorin Istrail:
QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads. 130-136 - Yufeng Shen, Yee Him Cheung, Shuang Wang, Itsik Pe'er:
A parametric Bayesian method to test the association of rare variants. 137-143 - Pavel Skums, David S. Campo
Modelling differential interferon resistance of HCV quasispecies. 144-148
3rd Workshop on Data Mining for Biomarker Discovery (DMBD)
- Junwan Liu, Xiaohua Hu, Zhoujun Li
Multiobjective optizition shuffled frog-leaping biclustering. 151-156 - Rency S. Varghese, Bin Zhou, Habtom W. Ressom:
Meta-analysis of LC-MS based metabolomic experiments. 157-164 - Ruifei Xie, Bin Han, Lihua Li, Juan Zhang, Lei Zhu:
Professional tennis player ranking strategy based Monte Carlo feature selection. 165-172 - Wayne E. Clarke, Christine Sidebottom, Isobel A. P. Parkin, Andrew Sharpe:
saskPrimer - An automated pipeline for design of intron-spanning PCR primers in non-model organisms. 173-177 - En-Shiun Annie Lee, Andrew K. C. Wong:
Synthesizing Aligned Random Pattern Digraphs from protein sequence patterns. 178-185 - E. M. Rivera, Z. Irizarry, Matilde Luz Sánchez Peña, C. E. Isaza, J. Seguel, Mauricio Cabrera-Ríos
Consistent detection of cancer biomarkers with linear models. 186-192 - Lenka Vyslouzilova
Brdicka curve - A new source of biomarkers. 193-198
2nd Workshop on Integrative data analysis in systems biology (IDASB)
- Sidahmed Benabderrahmane
Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis. 201-208 - Koon Yin Kong, Adam I. Marcus, Paraskevi Giannakakou, May D. Wang
A web interface for the quantification of microtubule dynamics. 209-214 - Neil Moore, Jerzy W. Jaromczyk:
Finding a longest open reading frame of an alternatively spliced gene. 215-222 - Piyaphol Phoungphol, Yanqing Zhang:
Multi-source kernel k-means for clustering heterogeneous biomedical data. 223-228 - Sudipto Saha
Systematic discovery of condition specific Wnt signaling subnetworks. 229-234 - Xiaodong Zhou, E. Olusegun George:
An improved data integration methodology for system biology. 235-240 - Noha A. Yousri
Associating gene functional groups with multiple clinical conditions using Jaccard similarity. 241-246 - Hui Li, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, William M. Southerland:
Rapid identification of multi-PTMs peptide sequence tags with a graph search approach. 247-250 - Hui Li, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, William M. Southerland:
Rapid generation of peptide sequence tags with a graph search algorithm. 251-254 - Kathryn Dempsey, Ishwor Thapa, Dhundy Bastola, Hesham H. Ali:
Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search. 255-261 - Rui Jiang
Integrating sequence conservation features and a domain-domain interaction network to detect disease-associated nsSNPs. 262-267 - Haiying Wang
Correlation of genomics features with the date and party hub distinction: A view from three dimensional protein structures. 268-273 - Jingchun Sun, Paul Hart, Zhongming Zhao:
Development and implementation of a novel computational tool for an efficient construction of drug-target interactome. 274-279
Workshop on Cancer Informatics
- Wenlong Tang, Hongbao Cao, Ji-Gang Zhang, Junbo Duan, Dongdong Lin, Yu-Ping Wang:
Classifying six glioma subtypes from combined gene expression and CNVs data based on compressive sensing approach. 282-288 - David J. Dittman, Taghi M. Khoshgoftaar, Randall Wald, Amri Napolitano:
Random forest: A reliable tool for patient response prediction. 289-296 - Sairam Behera, Ovidiu Daescu, Lech Papiez:
Optimal delivery of volumetric modulated arc therapy (VMAT) for moving target. 297-304 - Sabrina Rashid, Golam Morshed Maruf:
An adaptive feature reduction algorithm for cancer classification using wavelet decomposition of serum proteomic and DNA microarray data. 305-312
Workshop on Computational Structural Bioinformatics
- Jyh-Jong Tsay, Shih-Chieh Su:
Ab initio protein structure prediction based on memetic algorithm and 3D FCC lattice model. 315-318 - Marko Zivanic, Ovidiu Daescu, Anastasia Kurdia:
Rigid region pairwise sequence alignment. 319-326 - Masood Zamani, Stefan C. Kremer:
Amino acid encoding schemes for machine learning methods. 327-333 - Sajal Dash, Jack Snoeyink
On the energy of bifurcated hydrogen bonds for protein structure prediction. 334-337 - Promita Bose, Xiaxia Yu, Robert W. Harrison
Encoding protein structure with functions on graphs. 338-344 - Mina Maleki, Md. Mominul Aziz, Luis Rueda:
Analysis of relevant physicochemical properties in obligate and non-obligate protein-protein interactions. 345-351 - Jianlin Cheng
Recursive protein modeling: A divide and conquer strategy for protein structure prediction and its case study in CASP9. 352-357 - Irina Hashmi, Bahar Akbal-Delibas, Nurit Haspel, Amarda Shehu
Protein docking with information on evolutionary conserved interfaces. 358-365 - Brian S. Olson, S. Farid Hendi, Amarda Shehu
Protein conformational search with geometric projections. 366-373 - Kyung Dae Ko, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, William M. Southerland:
The development of a proteomic analyzing pipeline to identify proteins with multiple RRMs and predict their domain boundaries. 374-381 - Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu:
P.R.E.S.S. - An R-package for exploring residual-level protein structural statistics. 382-389 - Antonio Mucherino
A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem. 390-395 - Jorge E. Duarte, Jaime Velasco-Medina
Hardware simulation of yeast glycolytic oscillations. 396-399 - Bahar Akbal-Delibas, Irina Hashmi, Amarda Shehu
Refinement of docked protein complex structures using evolutionary traces. 400-404 - Lin Chen, Jing He
A distance and orientation dependent potential energy function with cluster energy. 405-409 - Weitao Sun:
Normal mode analysis of protein structure dynamics based on residue contact energy. 410-415 - Alberto Casagrande
SCOP family fingerprints: An information theoretic approach to structural classification of protein domains. 416-423 - Brian Yuan Chen, Soutir Bandyopadhyay
A statistical model of overlapping volume in ligand binding cavities. 424-431 - Filip Jagodzinski, Jeanne Hardy, Ileana Streinu:
Using rigidity analysis to probe mutation-induced structural changes in proteins. 432-437
Workshop on Bioinformatics for microRNA and Disease
- Dachuang Liu, Cuihong Dai, Dechang Xu
Cluster analysis of MiRNAs microarray data and prediction of lupeol's anti-cancer path. 440-445 - Xiaofeng Song, Minghao Wang, Yi-Ping Phoebe Chen
Identifying multiple stem-loops pre-miRNA using support vector machine. 446-448 - Tzu-Hung Hsiao, Hung-I Harry Chen, Patricia C. Sanchez-Diaz, Jaclyn Y. Hung, Yidong Chen, Yufei Huang:
Gene sets enrichment analysis of miRNA expression profile. 449-454
4th Workshop on Biomolecular Network Analysis (IWBNA)
- Shouguo Gao, Xujing Wang:
Topology-based scoring method for identification of responsive protein-protein interaction subnetwork. 457-464 - Hongwei Wu, Yaming Lin, Fun Choi Chan, Rocío Alba-Flores:
Module detection for bacteria based on spectral clustering of protein-protein functional association networks. 465-472 - M. Mondal Ananda, Jhih-rong Lin, Jianjun Hu:
Network based subcellular localization prediction for multi-label proteins. 473-480 - Pietro Hiram Guzzi, Pierangelo Veltri
VeNet: A framework for the analysis of protein interaction networks through vector space embedding. 481-487 - Mingming Liu, Yanwei Huang, Liqing Zhang, David R. Bevan
A new functional association-based protein complex prediction. 488-494 - Pietro Hiram Guzzi, Marianna Milano, Pierangelo Veltri
Using semantic similarity to detect features in yeast protein complexes. 495-502 - Yinhai Liu, Yang Yu, Chengjie Sun, Lei Lin, Xiaolong Wang:
A hierarchical link clustering based approach for identifying protein complexes by incorporating core-attachment structure. 503-508 - Kathryn Dempsey, Hesham H. Ali:
Evaluation of essential genes in correlation networks using measures of centrality. 509-515
Workshop on Biomedical and Health Informatics
- Shuihua Wang
Indoor signage detection based on saliency map and bipartite graph matching. 518-525 - Ricardo Chincha, Yingli Tian
Finding objects for blind people based on SURF features. 526-527 - Faiz M. Hasanuzzaman, Yingli Tian
Identifying medicine bottles by incorporating RFID and video analysis. 528-529 - Yang Chen, Manabu Torii
Learning from positive and unlabeled documents for automated detection of alternative splicing sentences in medline abstracts. 530-537 - Shameem Fathima, Nisar Hundewale
Comparison of classification techniques-SVM and naives bayes to predict the Arboviral disease-Dengue. 538-539 - Sardar Ansari, Ashwin Belle
Reduction of periodic motion artifacts from impedance plethysmography. 540-547 - Pavani Davuluri, Jie Wu, Ashwin Belle
A hybrid approach for hemorrhage segmentation in pelvic CT scans. 548-554 - Ashwin Belle
A physiological signal processing system for optimal engagement and attention detection. 555-561 - Saejoon Kim:
Margin-maximized redundancy-minimized SVM-RFE for diagnostic classification of mammograms. 562-569 - Dennis Wegener, Simona Rossi, Francesca Buffa, Mauro Delorenzi, Stefan Riiping:
Towards an environment for data mining based analysis processes in bioinformatics & personalized medicine. 570-577 - Meng-Han Yang, Yen-Jen Oyang, Jong-Ling Fuh
Application of density estimation algorithms in analyzing co-morbidities of migraine. 578-585 - Min Song
Extracting biomedical concepts from fulltext by relative importance in a graph model. 586-593 - Patrizia Vizza
A ROI-based algorithm for the classification of PET neuroimages. 594-595 - Alessio Pierluigi Placitelli, Luigi Gallo
3D point cloud sensors for low-cost medical in-situ visualization. 596-597 - Siddharth Pandey, Michael D. Kane, John A. Springer:
GLASS: Genomic Literature Area Sequence Search. 598-599 - Jie Wu, Pavani Davuluri, Ashwin Belle
Fracture detection and quantitative measure of displacement in pelvic CT images. 600-606 - Hua Xu, Samir AbdelRahman
An initial study of full parsing of clinical text using the Stanford Parser. 607-614 - Arash Shaban-Nejad
An enhanced graph-oriented approach for change management in distributed biomedical ontologies and linked data. 615-622 - Sujin Kim, Desok Kim, Hyun-Joo Choi, Hee Jae Joo:
Detection of lobular carcinoma in situ(LCIS) by image analysis. 623-624 - Sérgio Lifschitz
Dealing with reusability and reproducibility for scientific workflows. 625-632 - Jörg W. Schlundt, Stefan Jablonski:
A framework for designing compliance conform processes in clinical trials. 633-634 - Zainab Haydari, Yanqing Zhang, Hamid Soltanian-Zadeh
Semi-automatic epilepsy spike detection from EEG signal using Genetic Algorithm and Wavelet transform. 635-638 - Zakiyeh Shojaei Estabragh, Mohammad Mansour Riahi Kashani, Farnaz Jeddi Moghaddam, Simin Sari, Koosha Sadeghi Oskooyee:
Bayesian network model for diagnosis of Social Anxiety Disorder. 639-640 - Ilma Andayana, Desok Kim, William J. Howat, Hayley C. Whitaker, Mark Gregson:
Development of glandular shape analysis for computer aided detection of prostatic cancer in hematoxylin-stained histologic slides. 641-642 - Yang Huang, Daniel Zisook, Yunan Chen, Michael Selter, Paul Minardi, John E. Mattison:
Lessons learned in improving the adoption of a real-time NLP decision support system. 643-648 - King-Ip (David) Lin, Vivek V. Datla, Linda Morrison, Max M. Louwerse
Using a feedback system to enhance chart note quality in Electronic Health Records. 649-654 - Giovanna Sannino
A smart context-aware mobile monitoring system for heart patients. 655-695
Workshop on Informatics Applications in Therapeutics
- Zhiping Zhang, Honghuang Lin
Genomic profiling by machine learning. 662-668 - Arpita Das, Partha P. Goswami, Susanta Sen, Mahua Bhattacharya
Classification of poor contrast mammograms using a novel and fast boundary detection technique. 669-676 - Guanglan Zhang, Ellis L. Reinherz, Derin B. Keskin, Vladimir Brusic
A cDNA microarray for rapid and economical identification of HLA profiles of individuals. 677-679 - Esma Dilek, Tanya Zlateva, Guanglan Zhang, Lubomir T. Chitkushev
Probe design optimization of HLA microarray: Data cleaning of probe signals from cDNA tiling microarray: Outlier detection, noise reduction, and identification of uninformative probes in HLA typing application. 680-682 - Suresh Kalathur, Vladimir Brusic
Visualization tools for presenting and analysis of global landscapes of vaccine targets. 683-688
Workshop on Data mining for genome-wide association studies
- Sungyoung Lee
CUDA-LR: CUDA-accelerated logistic regression analysis tool for gene-gene interaction for genome-wide association study. 691-695 - Christine W. Duarte, Yann C. Klimentidis
A hybrid Bayesian Network/Structural Equation Modeling (BN/SEM) approach for detecting physiological networks for obesity-related genetic variants. 696-702 - Min-Seok Kwon, Kyunga Kim, Sungyoung Lee
GWAS-GMDR: A program package for genome-wide scan of gene-gene interactions with covariate adjustment based on multifactor dimensionality reduction. 703-707 - Ik-Soo Huh, Sohee Oh, Taesung Park:
A chi-square test for detecting multiple joint genetic variants in genome-wide association studies. 708-713 - Sungkyoung Choi
Robust analysis of related samples under the presence of population substructure. 714-720 - Rauf Ahmed Shams Malick, Nasir Touheed:
Variations in edge betweenness measure for gene regulatory networks. 721-724 - Seungyeoun Lee, Jinseok Oh, Min-Seok Kwon, Taesung Park:
Gene-gene interaction analysis for the survival phenotype based on the standardized residuals from parametric regression models. 725-729
The Second International Workshop on Information Technology for Chinese Medicine (ITCM2011)
- Yan Li, Biyun Xu, Shuhui Chen, Peng Liu, Aihua Ou, Yan Xu, Zehuai Wen
A randomized, controlled study of efficacy and safety on mild to moderate insomnia intervened by Chinese medicine in the integrated program. 732-739 - Rui-Zhi Zhao, You-jun Chen, Jian-xiong Cai:
Liver targeting effect of vinegar-baked Radix Bupleuri on oxymatrine in mice. 740-745 - Ying-rong Lao, Qiu-zhi Gu, Zhao-hui Liang, Ding-ying Tan, Yu-peng Fan, Shu-chun Li, Zhimin Yang, Yan Li:
A data mining research method based on the concept of evidence based TCM inheritance in famous veteran TCM doctors' personal medical records. 746-748 - Shao-nan Liu, Xiao-Yan Li, Chuan-jian Lu, Zehuai Wen
An accuracy comparison between two methods of double data entry in Chinese medicine research. 749-751 - Jingbo Sun, Rong Hua, Zijun Hou, Yinzhe Gui, Yan Huang:
Improvement of Qing Nao Tong Luo recipe on learning and memory impairment in senile dementia rats. 752-756 - Zhimin Yang, Jiamin Yuan, Chunhua Huang, Li Huang, Xiaobo Yang, Heng Weng:
Analysis of the indications of empirical prescription in TCM based on association rules. 757-759 - Zhaohui Liang
A kernel-decision tree based algorithm for outcome prediction on acupuncture for neck pain: A new method for interim analysis. 760-764 - Zehui He, Chuanjian Lu, Aihua Ou:
The Traditional Chinese Medicine syndromes of psoriasis in Chinese patients: Contribution of demographic and clinical variables. 765-768 - Jingjing Wang, Xiaoqiang Li, Huafu Fan, Fufeng Li:
Classification of lip color based on multiple SVM-RFE. 769-772 - Ning Tian, Bing Xi, Bi-Ying Su, Ri-Xin Chen:
Study on infrared radiation characteristic of heat-sensitive acupoints in bronchial asthma. 773-777 - Fengbin Liu, Zhengkun Hou
Constructing data mining model of five viscera correlation theory of Myasthenia Gravis based on rough set and association rules. 778-783 - Yi Luo, Ji-Qiang Li, Dan-Wen Zheng, Zhan-Peng Tan, Hong Zhou, Qing-Ping Deng, Yuntao Liu, Aihua Ou, Jian Yin:
Application of data mining technology in excavating prevention and treatment experience of infectious diseases from famous herbalist doctors. 784-790 - Wen-Ran Zhang
YinYang bipolar atom and quantum cellular automation - A unification. 791-797 - Kunbao Cai, Long Wan, Decheng Luo:
Lifted wavelet transforms with application to human pulse identification. 798-802 - Lixing Cao, Qingqing Zhou, Aihua Ou, Yanxin Chen, Zhiqiang Chen, Hao Chen, Xiaodan Li:
A preliminarily analysis of TCM-syndrome distribution of ectopic pregnancy surgery inpatients. 803-806 - Ling Han, Jinghong Yu, Buqing Lou, Ruizhi Zhao, Chuanjian Lu:
Effects of Yinxieling-optimization-decoction in treating psoriasis in mouse psoriasis models. 807-810 - Guang Zheng, Miao Jiang
Exploring the biological basis of deficiency pattern in rheumatoid arthritis through text mining. 811-816 - Xiaoyu Chen, Lizhuang Ma, Na Chu, Yiyang Hu:
Diagnosis based on decision tree and discrimination analysis for chronic hepatitis b in TCM. 817-822 - Heng Weng, Chuanliang Yi, Yingzi Lin, Yuping Zeng, Yang Li, Siliang Wu, Dacan Chen, Haoyang Fu:
Construction of semantic analysis system for Traditional Chinese Medicine unstructured medical records. 823-828 - Zhong Di, Honglai Zhang, Gang Zhang, Zhaohui Liang, Li Jiang, Jianhua Liu, Wenbin Fu
A clinical outcome evaluation model with local sample selection: A study on efficacy of acupuncture for cervical spondylosis. 829-833 - Wenwei Ouyang, Xiaozhong Lin, Yi Ren, Yi Luo, Yuntao Liu, Jiamin Yuan, Aihua Ou, Guo-Zheng Li:
TCM syndromes diagnostic model of hypertension: Study based on Tree Augmented Naive Bayes. 834-837 - Yan-zhao Lin, Zhi-min Yang, Lei Guo, Zi-jian Wu, Aihua Ou, Zi-yi Ye:
Analysis of functional status of Meridians in different types of TCM constitution. 838-842 - Na Chu, Lizhuang Ma, Xiaoyu Chen, Zhiying Che, Yiyang Hu:
Ensemble learning for synthesis of the four diagnostics of TCM. 843-847 - Xiao-hua Xu, Lin Lu
Biclustering binary data and its application in traditional Chinese Medicine. 848-853 - Xiao-bo Yang, Shixing Yan, Zheng-yang Zhou, Guo-Zheng Li, Yan Li, Xin-feng Guo:
Balance-bagging-PRFS algorithm for feature optimization on insomnia data intervened by traditional Chinese Medicine. 854-857 - Jianxiong Cai, Yuanqi Zhao, Xianping Guo, Min Zhao, Yubo Lu, Ruizhi Zhao, Yefeng Cai, Darong Wu:
Application of Conditional Logistic Regression method in a prospective effectiveness comparative study among patients with Acute Ischemic Stroke. 858-861 - Zhiwei Liang, Lingli Wang, Xiaoping Lai, Yanhua Li, Yongyun Wang, Zuye Liang:
The model of high-order multidimensional tree with tristate applied to the digitalization of Yin-Yang theory of Traditional Chinese Medicine. 862-867 - Simon K. Poon, Kei Fan, Josiah Poon, Clement Loy, Kelvin Chan, Paul Wing Hing Kwan
Analysis of herbal formulation in TCM: Infertility as a case study. 868-872 - Wen-Guang Zhao, Chao-fan Yu, Ruo-Ting Zhan, Rui He:
Research on data mining methods for organoleptic determination of Amomum villosum product. 873-880 - Yemin Cao, Haowei Zhang, Hongtao Xu, Jiuyi Xi, Xunsheng Zhu, Zheng Gu:
Research on the clinical classification of Xi clan diabetic foot using fuzzy C-means clustering method. 881-885 - Xunsheng Zhu, Qilin Deng, Qunchao Wang, Jiafu Zhang, Jie Yuan, Yemin Cao, Zheng Gu:
Research on temperature field in simulated living-porcine liver tissue irradiated by laser. 886-889 - Josiah Poon, Dawei Yin, Simon K. Poon, Xuezhong Zhou
Co-evolutionary genetic algorithm in symptom-herb relationship discovery. 890-894
Posters
- Masoud Farshbaf, Sarah Ostadabbas, Rasoul Yousefi, Mehrdad Nourani, Matthew Pompeo:
Pressure ulcer monitoring and intervention: A software platform. 897-898 - Jacqueline Gerhart, Ahmet Sacan:
BioDB: Integration of biological knowledgebases. 899 - Behrouz Madahian, Lisa Klesges, Ramin Homayouni:
System dynamics modeling of childhood obesity. 900 - Michael N. Gubanov, Linda G. Shapiro:
Using unified famous objects (UFO) to automate Alzheimer's disease diagnostics. 901-903 - Donghoon Lee, Seungpyo Jung, Youngju Park, Jingzhe Xu, Jusung Park:
Bio-signal procssor platform system for array sensors. 904-906 - Mina Maleki, Luis Rueda:
Domain-domain interactions in obligate and non-obligate protein-protein interactions. 907-908 - Yasumasa Kimura, Michiel J. L. de Hoon
Optimization of turn-back primers in isothermal amplification. 909-911 - Mingyi Wang, Yinbeing Ge, Ji He:
Medicago truncatula gene regulatory network prediction server. 912-914 - Shivajirao Manikrao Jadhav, Sanjay L. Nalbalwar
Modular neural network model based foetal state classification. 915-917 - Zahra Passand, Mahdi Azarnoosh:
Improved compression ratio for model-based ECG compression using differential coding. 918 - Sachintha Pitigala, Cen Li, Suk Jai Seo:
A comparative study of text classification approaches for personalized retrieval in PubMed. 919-921 - Yu Zhang, Xiuwen Liu:
Generative/discriminative models for nucleosome positioning. 922-924 - Jesse Turner, Lin Ji
Adaptive multi-scaled simulation algorithm for biochemical reaction in complex systems. 925-927 - Zhimin Yang, Jiamin Yuan, Chunhua Huang, Li Huang, Xiaobo Yang, Heng Weng:
Analysis of the indications of empirical prescription in TCM based on association rules. 928 - Jack W. London, Devjani Chatterjee:
Implications of observation-fact modifiers to i2b2 ontologies. 929-930 - Aditi Olemann, Desok Kim:
Detection of paroxysmal atrial fibrillation subjects based on circadian rhythm parameters of heart rate variability. 931-934 - István Bartha, Amalio Telenti, Viktor Müller, Jacques Fellay
Joint analysis of host and pathogen genomes. 935 - William Arndt, Thomas M. Asbury, W. Jim Zheng, Matt Mitman, Jijun Tang:
Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. 936-938 - Nada Basit, Harry Wechsler:
Function prediction for in silico protein mutagenesis using transduction and active learning. 939-940 - Leina Lu, Liang Zhou, Eric Z. Chen, Kun Sun, Peiyong Jiang
Genome-wide identification of TF-miRNA regulatory networks in myogenesis. 941 - Wei-Tai Hsu, Jia-Rong Yeh, Yi-Chung Chang, Men-Tzung Lo, Yi-Hsien Lin:
A computer aided for image processing of computed tomography in hepatocellular carcinoma. 942-944 - Jia-Rong Yeh, Wei-Tai Hsu, Yi-Chung Chang, Men-Tzung Lo, Yi-Hsien Lin:
Application of stochastic resonance for imaging enhancement of computed tomography in hepatocellular carcinoma. 945-947 - Masato Yoshizawa, Y-h. Taguchi
Gene expression regulation during differentiation from murine ES cells due to microRNA. 948-949 - Hiromu Mogi, Y-h. Taguchi
Protein binding prediction using non-metric multidimensional scaling method. 950-952 - Ryoichi Kinoshita, Y-h. Taguchi
Tissue specific methylation and genotype. 953-955 - Hee-Jeong Jin, Eun-Soo Jang, Si-Woo Lee:
Clinical network for case based reasoning methodology. 956-957 - B. S. Raghavendra, Ajit S. Bopardikar:
Identification of CpG islands in DNA sequences using supervised classification. 958-960 - Y-h. Taguchi
Principal component analysis for bacterial proteomic analysis. 961-963 - Yuichi Nakano, Y-h. Taguchi
Feature extraction for discriminance of symbiotic/parasitic bacterial type III effector protein using principal component analysis. 964-965 - Rajeshree Joshi, Nathan Yanasak:
Magnetic resonance angiography study of a normal mouse brain for creating a three-dimensional cerebral vasculature atlas and software for labeling vessels. 966-968 - Kristin R. Delfino, Sandra L. Rodriguez-Zas:
Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer. 969-971 - Kemal Aydin:
Analysis of uterine contraction signals. 972 - Zhongwei Li, Ebrahim Khosravi, Shuju Bai:
Interaction simulation of Lipoxygenase with arachidonate acid using NAMD. 973 - Mingmin Bai, Ebrahim Khosravi, Shuju Bai:
Docking arachidonic acid into human 5/12-lipoxygenase using ICM. 974 - Cynthia Zavala, Nicola V. L. Serao, Maria B. Villamil
Additive and multiplicative genome-wide association models identify genes associated with growth. 975-977 - Ahmed Sadeque, Nicola V. L. Serao, Bruce R. Southey, Zeeshan Fazal
Hierarchical modeling of alternative exon usage associations with survival. 978-980 - Leonid Zaslavsky, Vyacheslav Chetvernin, Dmitry Dernovoy, Boris Fedorov, William Klimke, Alexandre Souvorov, Igor Tolstoy, Tatiana A. Tatusova, David J. Lipman:
An approach to phylogenomic analysis of bacterial pathogens. 981 - Malik N. Akhtar, Bruce R. Southey, Kenneth I. Porter
Comparison of tandem mass spectrometry search methods to identify neuropeptides. 982-984 - Nicola V. L. Serao, Jonathan E. Beever, D. B. Faulkner, Sandra L. Rodriguez-Zas:
Integration of polygenic and individual SNP effects in genome-wide association analyses. 985-987 - Kenneth I. Porter
Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome. 988-990 - Kevin Molloy, Amarda Shehu
Assembly of low-energy protein conformations with heterogeneous fragments. 991-993 - Zeeshan Fazal
Model of ion intensity from tandem mass spectra for improved peptide identification and simulation. 994-996 - Michael A. Grasso
Genetic information for chronic disease prediction. 997 - Chaity B. Mukherjee, Hanspeter Winkler, Xiuwen Liu, Moumita Dutta, Kenneth H. Roux, Kenneth A. Taylor:
An accurate and reliable method for automatic picking of HIV/SIV spikes. 998-1000 - Myungjae Kwak, Gondy Leroy, Jesse D. Martinez:
A pilot study of a predicate-based vector space model for a biomedical search engine. 1001-1003 - David J. Gagne, Clare Bates Congdon:
A genetic algorithms approach to the inference of cis-regulatory modules. 1004 - Jeffrey A. Thompson, Clare Bates Congdon:
Using genetic algorithms for the inference of motifs that are represented in only a subset of sequences of interest. 1005 - Ashwini Kumar Mishra, Desok Kim, Ilma Andayana:
Development of three dimensional binary patterns for local bone structure analysis. 1006-1008 - James Karnia, Kristin R. Delfino, Maria B. Villamil
Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer. 1009-1011 - Ryota Doi, Y-h. Taguchi
The analysis of DNA shuffling by nMDS. 1012-1013 - Prabesh Kanel, Xiuwen Liu, Washington Mio:
Early detection of Alzheimer's based on intrinsic measurements. 1014-1016 - Yiqian Zhou, Jacqueline Gerhart, Ahmet Sacan:
Reconstruction of gene regulatory networks by stepwise multiple linear regression from time-series microarray data. 1017-1019 - Hyejin Cho, Hui-Hsien Chou:
E. coli and Agrobacterium non-coding regulatory RNA discovery. 1020-1022 - Arshan Nasir
The functional make up of proteomes is remarkably conserved. 1023-1025 - Theo G. M. van Erp, Ann L. Chervenak, Carl Kesselman
Infrastructure for sharing standardized clinical brain scans across hospitals. 1026-1028 - Syed Abbas Bukhari, Gustavo Caetano-Anollés:
Evolution of protein architectures inferred from phylogenomic analysis of CATH. 1029-1031 - Lijing Xu, Ramin Homayouni, E. Olusegun George:
Literature based Bayesian analysis of gene expression data. 1032 - Xiaodong Zhou, E. Olusegun George:
Weighted pooling high-throughput gene expression data sets to maximize the functional coherence of the top rank genes. 1033 - Mohammad R. Nezami Ranjbar, Yue Joseph Wang, Habtom W. Ressom:
Quality assessment of LC-MS metabolomic data. 1034-1036 - Jinlian Wang, Habtom W. Ressom:
Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies. 1037-1038 - Jie Zhang, Thomas Knobloch, Jeffrey D. Parvin, Christopher Weghorst
Identifying smoking associated gene co-expression networks related to oral cancer initiation. 1039-1041 - Jie Zhang, Shiwei Ni, Jeffrey D. Parvin, Yufeng Yang, Kun Huang:
Predicting Parkinson's disease related genes using frequent gene co-expression analysis. 1042-1044 - Chifeng Ma, Yufei Huang, Huang-I Harry, Yidong Chen:
Comprehensive investigation of connectivity map data-towards a drug mode of action network for personalized thnerapy. 1045-1047 - Tin Chi Nguyen
iQuant: A fast yet accurate GUI tool for transcript quantification. 1048-1050 - Tin Chi Nguyen
SPATA: A highly accurate GUI tool for de novo transcriptome assembly. 1051-1053 - Xi Wu, Nan Wang, Chaoyang Zhang, Ping Gong:
Reconstruction of gene regulatory networks using state space model. 1054-1056 - Zhenghao Zhang, Youting Sun, Ulisses M. Braga-Neto, Edward R. Dougherty, Jianqiu Zhang:
A parallel programming framework with Markovian messaging for LC-MS peptide detection. 1057-1059 - Kwang Su Jung, Jongpill Choi, Kiejung Park:
An array-CGH based analyzing tool for detecting unknown copy number variation. 1060 - Jeong-Hyeon Choi, Dong-Sung Ryu, Suhas Sureshchandra, Huidong Shi
A software package for next-gen bisulfite sequencing data analysis. 1061-1062 - John A. Ward, Chadi Filfili, Ruli Wang, Gary Hastings
Integrating a partial least squares model with an artificial neural network to discriminate FTIR spectra of virus infected vero cells at 6 hours post exposure. 1063-1065 - Dallas Snider, Xiaowei Xu:
Mining fetal magnetocardiogram data for high-risk fetuses. 1066-1068
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