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10k_test.sh
10k_test.sh
 
 
1seq.fa
1seq.fa
 
 
1seq_90bp.fa
1seq_90bp.fa
 
 
1seq_90bp.reads.fq
1seq_90bp.reads.fq
 
 
1seq_90bp_circ.fa
1seq_90bp_circ.fa
 
 
1seq_90bp_simulate_reads.sh
1seq_90bp_simulate_reads.sh
 
 
ERR039477.md5
ERR039477.md5
 
 
ERR039477.md5-gcc47
ERR039477.md5-gcc47
 
 
README
README
 
 
X.fa
X.fa
 
 
X.solution.fa
X.solution.fa
 
 
bubble.fa
bubble.fa
 
 
bubble.solution.fa
bubble.solution.fa
 
 
buchnera.fasta
buchnera.fasta
 
 
buchnera_simulate_reads.sh
buchnera_simulate_reads.sh
 
 
buchnera_test.sh
buchnera_test.sh
 
 
compare_fasta.py
compare_fasta.py
 
 
ec.fa
ec.fa
 
 
ec.solution.fa
ec.solution.fa
 
 
genome10K.fasta
genome10K.fasta
 
 
high_abundance.fa
high_abundance.fa
 
 
read50x_ref10K_e001.fa
read50x_ref10K_e001.fa
 
 
simple_test.sh
simple_test.sh
 
 
test_ERR039477.sh
test_ERR039477.sh
 
 
tip.fa
tip.fa
 
 
tip.solution.fa
tip.solution.fa
 
 

README

Those .sh scripts don't really say OK/NOT OK, you have to inspect the result yourself, but it's quite intuitive:

10k_test should assemble into 1 sequence
X remains an X
bubble becomes popped
tip becomes clipped