Popular repositories Loading

1. HLAkit HLAkit Public

   HLAkit is a software to detect somatic point mutations and loss of heterozygosity affecting HLA class I genes.

   Shell 2

2. Single_Cell_Somatic_Mutation_Caller Single_Cell_Somatic_Mutation_Caller Public

   This app integrates RNA expression and haplotype information for each variant detected by Mutect2 to infer somatic mutations while distinguishing them from sequencing and amplification artifacts.

   HTML 1

3. HaploPrep HaploPrep Public

   This app identifies high-quality heterozygous SNPs (Single Nucleotide Polymorphisms) and prepares them for haplotype phasing by filtering variants based on population frequency, allelic balance, an…

   Shell 1

4. Genomic_landscapes_melanocytes Genomic_landscapes_melanocytes Public

   R scripts and resources to accompany manuscript "The genomic landscapes of individual melanocytes from human skin", Tang and Fewing et al. Nature 2020

5. Footprints_v.0.1 Footprints_v.0.1 Public

   Footprints runs a c based tool, foots, that uses samtools to count the number of bases in your bam file with a minimum coverage of your choice.

   Makefile

6. STmut STmut Public

   A framework for visualizing somatic alterations in spatial transcriptomics data of cancer

   R