Commits

Branch selector

v0.4.x

User selector

All users

All time

Commit history

Commits on Oct 1, 2019

• task runtime: add default ":latest" tag to docker image if none present (#246)

  Show description for 03db644
  mlin

  authored
  03db644View commit details

  Copy full SHA for 03db644

  Browse repository at this point

Commits on Sep 23, 2019

• fix bug which causes AttributeError when calling str for some functions (#242)

  

  DavyCats

  authored and

  mlin

  committed
  469658fView commit details

  Copy full SHA for 469658f

  Browse repository at this point

Commits on Sep 18, 2019

• reduce call stack depth in task runtime (#240)

  Show description for ce370ac
  mlin

  authored
  ce370acView commit details

  Copy full SHA for ce370ac

  Browse repository at this point

Commits on Sep 11, 2019

• parser: recognize 'version development'

  mlin

  committed
  a3f6537View commit details

  Copy full SHA for a3f6537

  Browse repository at this point

Commits on Sep 10, 2019

• run/cromwell CLI: support relative paths in input JSON file (#235)

  Show description for 4354b4d
  mlin

  authored
  4354b4dView commit details

  Copy full SHA for 4354b4d

  Browse repository at this point

Commits on Aug 20, 2019

• Update README.md

  mlin

  committed
  df1bb71View commit details

  Copy full SHA for df1bb71

  Browse repository at this point

• bump lark version

  mlin

  committed
  8fba7f5View commit details

  Copy full SHA for 8fba7f5

  Browse repository at this point

Commits on Aug 19, 2019

• Cromwell 45

  mlin

  committed
  f2951abView commit details

  Copy full SHA for f2951ab

  Browse repository at this point

• set pos : SourcePosition on Type objects instantiated by syntax parser

  Show description for d9ed0b3
  mlin

  committed
  d9ed0b3View commit details

  Copy full SHA for d9ed0b3

  Browse repository at this point

• statically invalidate use of stdout(), stderr(), and glob() outside of task outputs

  mlin

  committed
  f991a20View commit details

  Copy full SHA for f991a20

  Browse repository at this point

• expand run_self_test

  mlin

  committed
  c22e8ffView commit details

  Copy full SHA for c22e8ff

  Browse repository at this point

• Update setup.cfg

  mlin

  committed
  1132925View commit details

  Copy full SHA for 1132925

  Browse repository at this point

• refactor StdLib to support file read/write functions in workflows (#224)

  Show description for a683e99
  mlin

  authored
  a683e99View commit details

  Copy full SHA for a683e99

  Browse repository at this point

Commits on Aug 12, 2019

• Fix WDL.resolve_file_import() @dinvlad

  Show description for a7eabc5
  mlin

  committed
  a7eabc5View commit details

  Copy full SHA for a7eabc5

  Browse repository at this point

Commits on Aug 11, 2019

• logging enhancements

  Show description for c80e14f
  mlin

  authored
  c80e14fView commit details

  Copy full SHA for c80e14f

  Browse repository at this point

• simplify compound Value constructors (#221)

  Show description for e1f9229
  mlin

  authored
  e1f9229View commit details

  Copy full SHA for e1f9229

  Browse repository at this point

• restrict call File inputs to workfow inputs or call outputs (#220)

  Show description for 2d76b84
  mlin

  authored
  2d76b84View commit details

  Copy full SHA for 2d76b84

  Browse repository at this point

Commits on Aug 10, 2019

• more BioWDL corpi

  mlin

  committed
  09172ecView commit details

  Copy full SHA for 09172ec

  Browse repository at this point

• tighten name collision check for workflow outputs (#196)

  Show description for bb001ec
  mlin

  authored
  bb001ecView commit details

  Copy full SHA for bb001ec

  Browse repository at this point

Commits on Aug 8, 2019

• upgrade unit test suite to pytest (#218)

  Show description for c6906cc
  mlin

  authored
  c6906ccView commit details

  Copy full SHA for c6906cc

  Browse repository at this point

Commits on Aug 7, 2019

• refactor Env (#184)

  Show description for 46d3f9b
  mlin

  authored
  46d3f9bView commit details

  Copy full SHA for 46d3f9b

  Browse repository at this point

Commits on Jul 26, 2019

• add __str__ to Expr classes (#215)

  

  DavyCats

  authored and

  mlin

  committed
  2f32710View commit details

  Copy full SHA for 2f32710

  Browse repository at this point

Commits on Jul 23, 2019

• add `miniwdl run_self_test`

  mlin

  committed
  1cbdc97View commit details

  Copy full SHA for 1cbdc97

  Browse repository at this point

Commits on Jul 22, 2019

• add minimum docker-py version

  Show description for f9ae8ca
  mlin

  committed
  f9ae8caView commit details

  Copy full SHA for f9ae8ca

  Browse repository at this point

Commits on Jul 20, 2019

• bump skylab demo script

  mlin

  committed
  f432bb1View commit details

  Copy full SHA for f432bb1

  Browse repository at this point

• delete dead code

  mlin

  committed
  2d54787View commit details

  Copy full SHA for 2d54787

  Browse repository at this point

Commits on Jul 19, 2019

• meta updates

  mlin

  committed
  1adefc6View commit details

  Copy full SHA for 1adefc6

  Browse repository at this point

• Update README.md

  mlin

  committed
  e63cb7cView commit details

  Copy full SHA for e63cb7c

  Browse repository at this point

• add tests/skylab.py script for testing HCA workflows

  mlin

  committed
  e29d3e4View commit details

  Copy full SHA for e29d3e4

  Browse repository at this point

• cc logs to files in each workflow/task run directory

  mlin

  committed
  c0a184dView commit details

  Copy full SHA for c0a184d

  Browse repository at this point

• workflow optional inputs

  mlin

  committed
  5c7c482View commit details

  Copy full SHA for 5c7c482

  Browse repository at this point

Commits on Jul 18, 2019

• task stderr log robustness

  mlin

  committed
  0a9ca8bView commit details

  Copy full SHA for 0a9ca8b

  Browse repository at this point

• in task command, leave escape sequences for shell to interpret (#212)

  mlin

  authored
  ab67ef7View commit details

  Copy full SHA for ab67ef7

  Browse repository at this point

• placeholder test case for issue #211

  mlin

  committed
  4348546View commit details

  Copy full SHA for 4348546

  Browse repository at this point

• size(): accept Gi for GiB, etc.

  mlin

  committed
  9969949View commit details

  Copy full SHA for 9969949

  Browse repository at this point