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1. MTBseq_source MTBseq_source Public

   MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis c…

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2. NTMtools NTMtools Public

   This repository contains scripts and manuals for whole genome sequencing based analysis of Non-tuberculous mycobacteria. Questions? Ask mdiricks@fz-borstel.de

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3. HaemoSeq HaemoSeq Public

   A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.

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4. binoSNP binoSNP Public

   🔍 💊 Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains

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5. NTMseq NTMseq Public

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6. SMaltophilia_phylo SMaltophilia_phylo Public

   Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper

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