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@tucca-cellag

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benjibromberg/README.md

Hi, I'm Benji Bromberg

Research Technician at the Tufts University Center for Cellular Agriculture (Kaplan Lab). MS in Computer Science from Tufts University, BS in Biochemistry and Molecular Biology from Lewis & Clark College.

I started my work in the wet lab (primarily cell line development for fish, crusteceans, and avians), but I've transitioned into computational biology and bioinformatics. Now I build pipelines and tools to support the lab's computational research. I also founded our lab's GitHub organization to centralize our computational projects.

Currently working on:

Side projects:

ORCID | bromberg.benji@gmail.com

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  1. tucca-cellag/caail tucca-cellag/caail Public

    CAAIL (Cellular Agriculture AI Library), is a curated, open-source collection of resources dedicated to the intersection of Cellular Agriculture and AI

    1

  2. zotero-context zotero-context Public

    Project-scoped Zotero references for Claude Code — auto-triggering skill, vendored scripts, no MCP server. For surfacing curated literature while you code.

    Python 1

  3. claude-code-customizations claude-code-customizations Public

    Hooks and rules I use with Claude Code, including a PreToolUse Bash hook that catches diagnostic-output anti-patterns (pipe-to-head/tail/grep, 2>/dev/null, || true) via a tripwire + LLM disambiguat…

    Shell 1

  4. claude-nfcore-docs claude-nfcore-docs Public

    Claude Code skill for loading nf-core documentation and specifications into context. Compliance checking, spec-driven development, and audit support for nf-core pipeline projects.

    Python 2

  5. survivor-fantasy survivor-fantasy Public

    Survivor fantasy league webapp. Snake draft, configurable scoring, win probability simulations. Flask, SQLAlchemy, Chart.js, Docker + Tailscale.

    Python 1

  6. tucca-cellag/tucca-rna-seq tucca-cellag/tucca-rna-seq Public

    TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

    R 19