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gapseq Public
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
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maaslin3 Public
Forked from biobakery/maaslin3MaAsLin3: Microbiome Multivariate Association with Linear Models
R Other UpdatedApr 9, 2026 -
gutsmash Public
Forked from victoriapascal/gutsmashgutSMASH
Python GNU Affero General Public License v3.0 UpdatedApr 2, 2026 -
gapsnake Public
Forked from Waschina/gapsnakeA snakemake workflow for gapseq reconstructions
Python UpdatedFeb 16, 2026 -
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microbetag Public
Forked from hariszaf/microbetagannotating microbial co-occurrence networks
Python GNU General Public License v3.0 UpdatedDec 1, 2025 -
neufit Public
Forked from misieber/neufitFit neutral null model to species abundance data
Python UpdatedNov 13, 2025 -
atlas Public
Forked from metagenome-atlas/atlasATLAS - Three commands to start analyzing your metagenome data
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 10, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
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growthrates Public
Forked from tpetzoldt/growthratesR Package growthrates
R GNU General Public License v2.0 UpdatedSep 19, 2023 -
WormExp Public
Forked from evoecogen/WormExpProject organization, documentation and scripts for the update of WormExp database
Jupyter Notebook UpdatedApr 26, 2023 -
seqtime Public
Forked from hallucigenia-sparsa/seqtimeThe seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics
HTML Other UpdatedDec 9, 2022 -
metacoder Public
Forked from grunwaldlab/metacoderParsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
R Other UpdatedJul 13, 2022 -
CORPSE Public
Forked from Porthmeus/CORPSECObRaPy tool SEt
Python GNU General Public License v3.0 UpdatedMay 19, 2022 -
isme2020 Public
Zimmermann2020 - The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans
R UpdatedFeb 3, 2021 -
sclack Public
Forked from haskellcamargo/sclackThe best CLI client for Slack, because everything is terrible!
Python GNU General Public License v3.0 UpdatedNov 28, 2020 -
driven Public
Forked from opencobra/drivenData-Driven Constraint-based analysis
Python Apache License 2.0 UpdatedMar 26, 2019 -
sybil Public
Forked from cran/sybilFork of sybil — Efficient Constrained Based Modelling in R. Homepage: http://www.cs.hhu.de/en/research-groups/bioinformatics/software/sybil.html
R GNU General Public License v3.0 UpdatedMar 26, 2018 -
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askDarwin Public
Text mining in a Darwinian corpus
R GNU General Public License v3.0 UpdatedSep 16, 2017 -
corda Public
Forked from resendislab/cordaAn implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Python MIT License UpdatedAug 23, 2017 -
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cele_mods Public
Comparison of metabolic models of C. elegans
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