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fmsi Public
Forked from OndrejSladky/fmsiFMSI is an exact f-masked-sueprstrings-based index for membership queries and set operations on k-mer sets.
C++ MIT License UpdatedApr 23, 2026 -
galitime Public
Software for benchmarking scientific software.
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tp-zpevnik Public
Zpěvník Technické přestávky. Výsledné (automaticky generované) zpěvníky se nachází na http://karel-brinda.github.io/tp-zpevnik/.
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prefixsuffix-kmer Public
Forked from aryakaul/prefixsuffix-kmer✂️🧬🧩 - rapidly identify structural variation across the bacterial ToL
Python GNU General Public License v3.0 UpdatedDec 31, 2025 -
rnftools Public
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
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samsift Public
SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
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MiniPhy Public
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
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attotree Public
Rapid estimation of phylogenetic trees using sketching
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fulgor Public
Forked from jermp/fulgorFulgor is a fast and space-efficient colored de Bruijn graph index.
C++ MIT License UpdatedNov 26, 2024 -
Supplementary repository for "Efficient and robust search of microbial genomes via Phylogenetic Compression"
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Phylign Public
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
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ganttrify Public
Forked from giocomai/ganttrifyCreate beautiful Gantt charts with ggplot2
R GNU General Public License v3.0 UpdatedMar 10, 2024 -
f-masked-superstrings-supplement Public
Forked from OndrejSladky/f-masked-superstrings-supplementPython MIT License UpdatedMar 6, 2024 -
kmercamel Public
Forked from OndrejSladky/kmercamelKmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
C++ MIT License UpdatedFeb 16, 2024 -
rase-pipeline Public
Forked from c2-d2/rase-pipelineRASE pipeline for inferring antibiotic resistance and susceptibility using genomic neighbor typing.
Python MIT License UpdatedFeb 16, 2024 -
jarvis2 Public
Forked from cobilab/jarvis2Efficient DNA sequence compression
C GNU General Public License v3.0 UpdatedJul 4, 2023 -
unprotect-docx Public
Bash script to unprotect password-protected unencrypted DOCX documents.
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rase-db-ngonorrhoeae-gisp Public
Forked from c2-d2/rase-db-ngonorrhoeae-gispMakefile MIT License UpdatedMar 15, 2023 -
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xz Public
Forked from xz-mirror/xz💾 Free general-purpose data compression software with high compression ratio.
C Other UpdatedFeb 8, 2023 -
NanoSim-H Public
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
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simplitigs-supplementary Public
Data and pipelines for Simplitigs as an efficient and scalable representation of de Bruijn graphs
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