iRODS client programs and API

Applications for the management of data and metadata in iRODS

A Python client API for iRODS

Perl iRODS Client Wrapper Library

WTSI DNA Pipelines Perl Utility Library

A library of Python functions and classes common to NPG applications

Sqyrrl - an HTTP server for files hosted in iRODS

Singularity and Docker material

Automated data mangement for Oxford Nanopore DNA sequencing instruments

An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

A shim API to provide library-independent logging statements for Go projects

logshim-zerolog is a backend using Zerolog for https://github.com/kjsanger/logshim

Tools for managing HTS (BAM and CRAM) format files in iRODS.

Tool for demultiplexing Nanopore barcode sequence data

Plugins for use with HTSlib

Components of the WTSI genotype analysis pipeline.

WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

Utilities for handling NGS data

QC checks and metrics for Illumina NGS data

Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.

Processing and analysis of data coming from Illumina sequencing machines

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Go iRODS Client

GitHub Action providing a custom Docker container in which to build iRODS clients

A command-line client to enable communication with the npg_porch API.

Process and Pipe Pipeline Panacea