A package to analyze crop models outputs

Read and modify STICS input/output files:

Easily Install and Load 'SticsRPacks' packages

Estimate Crop Models' parameters

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Create beautiful Gantt charts with ggplot2

Estimez votre empreinte climat - le modèle de calcul

R's data.table package extends data.frame:

Emacs Python Development Environment

Scraping Légifrance to look at the evolution of the creation of CNRS positions

the hierfstat package

Structure Harvester is a program for parsing the output of Pritchard's STRUCTURE and for performing the Evanno method.

Shell script for install different R-(3.X.X) versions from source.

talk with NCBI entrez using R

Polymode for markdown-mode

Polymodes for the R language

adegenet: a R package for the multivariate analysis of genetic markers

Glances an Eye on your system. A top/htop alternative for GNU/Linux, BSD, Mac OS and Windows operating systems.

Tools for computation on batch systems

Open Data, Access and Mining (https://inrae.github.io/ODAM/)

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

STITCH - Sequencing To Imputation Through Constructing Haplotypes

The RColony package provides simple tools for the implementation of the Colony pedigree analysis software.

shUnit2 is a xUnit based unit test framework for Bourne based shell scripts.

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

Bindings for Tabula PDF Table Extractor Library

GS3, software for genomic prediction and whole genome Bayesian analysis

Tools to correct genome assembly using NGS data

AD computation with Template Model Builder (TMB)

Open and reproducible handling of "omics" data for the Vitis genus.