Tools for querying and analysis of genomic data

Multiple-replica multiple-condition ChIPSeq pipeline

Simple scripts for handling Unique Molecular Indexes in Fastq and Bam files

Google Drive direct download of big files

Manage perl installations in your $HOME

A trivial Perl statistics module.

Perl XS bindings to libBigWig for access the UCSC/kent big formats

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

The fink package manager

Miscellaneous bioinformatics scripts written by me for myself and other people

MACS -- Model-based Analysis of ChIP-Seq

A tool to call somatic single nucleotide variants.

bedtools - the swiss army knife for genome arithmetic

Variant calling and somatic mutation/CNV detection for next-generation sequencing data

Generate GD images of biological sequences and annotations

Core BioPerl 1.x code