BSR-Based Allele Calling Algorithm
Genome scale metabolic models in SBML format
Magic gene-neighborhood analyses
A standardised workflow to explore and analyse prokaryotic methylation patterns for Nanopore sequencing data
A workflow to rapidly identify species and antimicrobial resistance genes in positive blood cultures sequenced using Oxford Nanopore Technologies (ONT)
Prokaryote Gene Regulatory Network (ProGRN) Inference Pipeline
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater
Code for group website
Statistical analysis of bacterial dispersal in R
personal website
Preliminary analysis of KWF Beach Sampling results 2019 - 2020
Global microbiome health for all
A simple simulation of microscopic life, with plants, fungi and three types of bacteria. It's in spanish. IT IS NOT A SCIENTIFIC SIMULATION, IT IS JUST FOR FUN
A comprehensive NGS analysis pipeline for E. coli (K-12): Includes QC with FastQC, alignment using Bowtie2, and variant calling for genomic research.
A simple simulation of microscopic life, with automatic food, two types of bacteria and a virus, they can evolve! IT IS NOT A SCIENTIFIC SIMULATION, IT IS JUST FOR FUN
A simple simulation of microscopic life, with plants, fungi, bacteria and virus. They can eat, evolve and reproduce. IT IS NOT A SCIENTIFIC SIMULATION, IT IS JUST FOR FUN
Helicobacter pylori in stomach - Midede Helicobacter pylori
Code, data, and results for the phylogenetic resistance manuscript
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