A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Methylation array preprocessing.
Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments
CytoMeth tool compiles a set of open source software named in the Roche pipeline guidelines to perform SeqCap Epi data analysis.
A complete product data health audit for a fictional specialty food company. Five artifacts (HTML report, executive tearsheet, dashboard, Excel workbook, Shiny calculator) from one R+Quarto pipeline. Portfolio piece.
Bioconductor Package - Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
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