Processing NEON soil microbe marker gene sequence data into ASV tables.
neonMicrobe: Processing NEON soil microbe marker gene sequence data into ASV tables, duplicated from https://github.com/claraqin/neonMicrobe
Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.
The R-Shiny application for the Australian Soil Microbial 16S data browsing.
RhizoSolver classifies 16s rRNA sequences into the Rhizobiales genus.
Script for analyzing metabolic data
Adaption of Section 2 of Norgen's Soil DNA Isolation Kit. It was divided into 3 protocols, but feel free to wrap up (just pay attention to the number of tip racks). Recalibrate each time you are running the protocols (specially before the 3rdprotocol)
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