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Commits on Jun 2, 2021

• Update github_build.yml

  trvinh

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• Update github_build.yml

  trvinh

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• Update github_build.yml

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• test runmulti

  trvinh

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Commits on Jun 1, 2021

• remove ncbi var

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• applied autopep

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• changed url of fasta36

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• fixed checkData

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• added fas.checkAnno into checkData; fixed force opt in addTaxon

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Commits on May 31, 2021

• renamed FAS fn; added auto annotation for fdogFas

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Commits on Apr 29, 2021

• replaced default taxon version to current date; merged hamstr and fdog logs

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Commits on Apr 23, 2021

• able to work with long seq Id

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Commits on Apr 21, 2021

• not replacing space by @ for hmmoutput in parseHmmer4pm

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Commits on Apr 11, 2021

• check if genome_dir and blast_dir contain files

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• ignore mapping file for checkData

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Commits on Apr 1, 2021

• changed max id length to 20; removed XML perl modules

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Commits on Mar 29, 2021

• symlinks for fasta36 input; improved fdogs.run according to #5

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• added more checks to fdogs.run

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Commits on Mar 24, 2021

• skip fa.mapping while checking genome_dir

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• write debug files to output dir

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Commits on Mar 19, 2021

• fixed error mapping ID file not found

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• changed path in hamstr.pl to current directory

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• changed path in hamstr.pl to current directory

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• shorten long header for addTaxon, check for long headers in oneseq and checkData

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Commits on Mar 16, 2021

• fixed symlinks in blast_dir for addTaxon

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Commits on Feb 23, 2021

• modified help menu

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Commits on Feb 22, 2021

• lowComplexityFilter off

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Commits on Feb 19, 2021

• version bump, replaced travis by github actions

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• removed formating msg of hamstr.pl

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• removed formating help menu of oneseq.pl

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• defined variable in checkValidSeqs fn

  trvinh

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• ref load_config fn in runMulti to runSingle

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• Create github_build.yml

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Commits on Feb 18, 2021

• central version #4

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• fixed options searchTaxa and coreTaxa

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