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@Mye-InfoBank

Mye-InfoBank

COST Action CA20117 - Mye-InfoBank is dedicated to converting molecular profiles of myeloid cells into biomarkers for inflammation and cancer.

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  1. scRAFIKI scRAFIKI Public

    A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

    Nextflow 11

  2. downstream-analysis downstream-analysis Public

    R 1

  3. scib scib Public

    Forked from theislab/scib

    Benchmarking analysis of data integration tools

    Python

  4. cellxgene_VIP cellxgene_VIP Public

    Forked from interactivereport/cellxgene_VIP

    Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…

    HTML

  5. cellxgene cellxgene Public

    Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    JavaScript

  6. SIMBA-QC SIMBA-QC Public

    This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBA🦁 pipeline.

    Python

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