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@MDU-PHL

Microbiological Diagnostic Unit Public Health Laboratory

Australian national reference laboratory for Salmonella, Listeria and EHEC.

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  1. abritamr abritamr Public

    A pipeline for running AMRfinderPlus and collating results into functional classes

    Python 90 18

  2. bohra bohra Public

    A pipeline for bioinformatics analysis of bacterial genomes

    Nextflow 32 5

  3. mlstdb mlstdb Public

    A Python package to update the MLST database for the mlst tool.

    Python 18

  4. meningotype meningotype Public

    In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

    Python 14 9

  5. emmtyper emmtyper Public

    Forked from Andre-Tan/EmMAIL

    emm Automatic Isolate Labeller

    Jupyter Notebook 12 5

  6. pango-collapse pango-collapse Public

    app to collapse Pango lineages for reporting

    Python 12 1

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