A repo of short "vignettes" illustrating statistical concepts

A 'ggplot2' extension that focusses on expanding the plotter's arsenal of guides, such as axes, legends and colour bars. It brings various improvements to existing guides by re-implementation, as w…

A list of scRNA-seq analysis tools

Clustering scRNAseq by genotypes

Single-cell epigenomics analysis tools

ALIEN is a CUDA-powered artificial life simulation program.

Xol Toolhead is the evolution of 'Mantis Xol 2'. Aimed at modularity and quality of life improvements for installation and serviceability. We have left the mantis carriage behind, and thus are now …

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

AlphaFold2 non-docker setup

Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.

Examples of single-cell genomic analysis accelerated with RAPIDS

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

Performance Benchmark of top Github languages

scRNAseq analysis notes from Ming Tang

Static Code Analysis for R

WORK IN PROGRESS: Nevermore Max Air Filter

Zenburn color scheme for PuTTY

A Hyperparameter Tuning Library for Keras

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

🐞 Convert NCBI taxonomy dump into lineages

AmpliCI, a model-based algorithm for denoising Illumina amplicon data.

A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

Semantic Image Synthesis with SPADE

Easily generate information-rich, publication-quality tables from R