Application that provides the necessary tools to manage genetic sequences. Provides within its content a tool to compare databases based on FASTA, CLUSTAL and JSON files.

0.0.1 (Development)

• You need install the BioPython library, more information:
  • https://biopython.org/wiki/SeqIO
• You need the json library, more information:
  • https://docs.python.org/3/library/json.html

In the src directory you can find the complete code of this project:

• The file organism.py contains a class that provides an object called Organism, this objects can uses to manipulate complete genetic sequences, from a collection of methods that read files FASTA, CLUSTAL and JSON.

• The file testClass.py contains a program that, with the class Organism compare a collection of files to updated them.

• The file testQuery.py contains an example of how to do a query on a web page (like the web page of the NCBI) for download a collection of FASTA or CLUSTAL files.

• The file testDatabase.py contains an example of how to do a complete update from a collection of files recently downloaded and a database that needs to be change, creating new organisms and replacing fields of the existing ones

The test files must be run from src directory, for example: (user@/src)$ python testClass.py