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STAR
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Commits on Sep 2, 2015
Fixed minor compilation problem.
alexdobin
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b0c7c4e
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Fixed minor compilation problem.
alexdobin
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fe408ea
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Commits on Aug 31, 2015
Compiled binaries.
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bef9070
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Implemented --alignEndsType Extend3pOfRead1 option for full extension of the 3' end of read 1.
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a031692
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Commits on Aug 28, 2015
Re-implemented the end-to-end mapping. Still debugging.
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bfee48b
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Fixed a bug in the --alignEndsType Extend5pOfRead1 option. Fixed a bug in the new --alignSJstitchMismatchNmax option.
alexdobin
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24095ba
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Commits on Aug 25, 2015
Minor changes.
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Commits on Aug 19, 2015
Re-wrote Makefile for more transparent compilation.
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c81087b
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Commits on Aug 18, 2015
Reverted to good versions of Makefile and .tavis.yml .
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c69f47d
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Experimenting with travis for Mac OSX.
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3575a51
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Experimenting with travis for Mac OSX.
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Experimenting with travis for Mac OSX.
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39c0286
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Experimenting with travis.
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Commits on Aug 17, 2015
Experimenting with travis.
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f17442c
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Experimenting with travis.
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05f2122
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Experimenting with travis.
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Commits on Aug 14, 2015
Fixed a bug which caused problems in some cases of genome generation without annotations.
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cba93c7
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Commits on Aug 12, 2015
Compiled Linux binaries.
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Implemented --alignSJstitchMismatchNmax option to allow for mismatches around non-canonical junctions.
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Commits on Aug 11, 2015
Merge pull request #61 from nathanhaigh/fusion-update
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Merge pull request #60 from nathanhaigh/make_manual_travis
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Merge pull request #59 from nathanhaigh/typos
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Merged pull request from Alex Finkel to allow 'parameter=value' option formatting, e.g. --runThreadN=8.
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Merge branch 'alexf101-parse_key_equals_value_cmdline'
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Added double quotes to the parameter value if it contains white spaces.
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Merge branch 'parse_key_equals_value_cmdline' of https://github.com/alexf101/STAR into alexf101-parse_key_equals_value_cmdline
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Deleted Mac_Include directory that is not used anymore.
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Commits on Aug 7, 2015
Remove out-of-date STAR-Fusion-0.1.1 directory
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Nathan S. Watson-Haigh
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0eb5017
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Updated STAR-Fusion to v0.3.1
Nathan S. Watson-Haigh
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eabb6e6
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Added submodule update commands for already checked out repos
Nathan S. Watson-Haigh
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README uses Markdown and updated duild info for top-level Makefile
Nathan S. Watson-Haigh
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c41e661
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Ignore the STAR binary once it's built
Nathan S. Watson-Haigh
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e036e35
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Use Travis-CI to test source and document build process.
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Added top-level Makefile with `STAR` and `manual` as targets.
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b270b99
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Fixed typos
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840a633
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