In this folder is some additional configuration that can be useful for local development. None of this should be deployed directly to production
Requirements:
-
System runs docker (including docker compose)
- Run from the root of the repository:
cd dev
docker compose up -d
- (Option 1) Apply SAML2 configuration to security.properties in cBioPortal:
authenticate=saml
spring.security.saml2.relyingparty.registration.keycloak.assertingparty.metadata-uri=http://localhost:8084/realms/cbio/protocol/saml/descriptor
spring.security.saml2.relyingparty.registration.keycloak.assertingparty.entity-id=http://localhost:8084/realms/cbio
spring.security.saml2.relyingparty.registration.keycloak.entity-id=cbioportal
spring.security.saml2.relyingparty.registration.keycloak.signing.credentials[0].certificate-location=classpath:/dev/security/signing-cert.pem
spring.security.saml2.relyingparty.registration.keycloak.signing.credentials[0].private-key-location=classpath:/dev/security/signing-key.pem- (Option 2) Apply OIDC configuration to security.properties in cBioPortal:
authenticate=oauth2
spring.security.oauth2.client.registration.keycloak.redirect-uri=http://localhost:8080/login/oauth2/code/keycloak
spring.security.oauth2.client.registration.keycloak.client-name=cbioportal_oauth2
spring.security.oauth2.client.registration.keycloak.client-id=cbioportal_oauth2
spring.security.oauth2.client.registration.keycloak.client-secret=client_secret
spring.security.oauth2.client.registration.keycloak.authorization-grant-type=authorization_code
spring.security.oauth2.client.registration.keycloak.client-authentication-method=client_secret_post
spring.security.oauth2.client.registration.keycloak.scope=openid,email,roles
spring.security.oauth2.client.provider.keycloak.issuer-uri=http://localhost:8084/realms/cbio
spring.security.oauth2.client.provider.keycloak.user-name-attribute=email- Set the following in application.properties:
persistence.cache_type=no-cache
session.service.url=http://localhost:5000/api/sessions/my_portal/
spring.datasource.url=jdbc:mysql://localhost:3306/cbioportal?useSSL=false&allowPublicKeyRetrieval=true
spring.datasource.username=cbio_user
spring.datasource.password=somepassword
spring.jpa.database-platform=org.hibernate.dialect.MySQL5InnoDBDialect
spring.datasource.driver-class-name=com.mysql.jdbc.Driver- Start cBioPortal application on port 8080. The login credentials are
testuser:P@assword1.