Stars
Python package to analyze the results of pooled CRISPR screens
Development of on-target scoring for CRISPR screening
Package to Score Sequences using Rule Set 3
A wrapper to simplify the execution of Single Cell analysis with the sc verse
Phenotype detection in pooled genetic perturbation screens
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
A collection of training material from offered Galaxy courses
Modeling variable guide efficiency in pooled CRISPR screens with ContrastiveVI+
Repository for supplemental material of manuscripts
Flexible analysis of high-content CRISPR screening
Modeling of time series data for CRISPR KO experiments
A bioinformatics web application designed to enable genome-wide CRISPR loss-of-function inferences with compressed sgRNA subsets powered by information embedded in biological networks that exploit …
Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
A place to collect papers that are related to deep learning and computational biology
swim with the flow -- CRISPR + flow cytometry screen analysis
XGBoost classifiers to predict variant classification conflict
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
Tools for working with genomic and high throughput sequencing data.
A web application which helps us investigate the importance of features in ML-based tools for CRISPR/Cas9 gRNA efficiency prediction. This was developed as part of an MSc project in 2020.
Code used to generate DivRef, a human diversity reference for genome editing