Bovine Pan-Genome Consortium Website

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

the pangenome graph builder

base-accurate DNA sequence alignments using WFA and mashmap3

implicit pangenome graph

Phased structural variant discovery in pangenomes

Aligns short reads using dynamic seed size with strobemers

tools for working with genome variation graphs

A genome completeness evaluation tool based on miniprot

De novo assembler for single molecule sequencing reads using repeat graphs

Jasmine: SV Merging Across Samples

Tools (written in C using htslib) for manipulating next-generation sequencing data

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads