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PrecisionProDB Public
generate personalized reference protein sequences for proteome search
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psm_utils Public
Forked from CompOmics/psm_utilsCommon utilities for parsing and handling peptide-spectrum matches and search engine results in Python
Python Apache License 2.0 UpdatedDec 4, 2025 -
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leafcutter Public
Forked from davidaknowles/leafcutterAnnotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
C++ Apache License 2.0 UpdatedNov 6, 2025 -
scICEpy Public
scICE in Python for single cell data analysis
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DecoyPYratPlus Public
Forked from wtsi-proteomics/DecoyPYratDecoyPYratPlus - Decoy Sequence Database Creation for Proteomic Mass Spectrometery Analyses
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ShinyCell2 Public
Forked from the-ouyang-lab/ShinyCell2ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready v…
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Festem Public
Forked from Edward-Z-Chen/FestemDirectly selecting cell-type marker genes for single-cell clustering analyses
R GNU General Public License v3.0 UpdatedJul 31, 2025 -
seurat-faster Public
Forked from satijalab/seuratR toolkit for single cell genomics
R Other UpdatedJul 18, 2025 -
msigdbr Public
Forked from igordot/msigdbrMSigDB gene sets for multiple organisms in a tidy data format
R Other UpdatedJul 17, 2025 -
CellChat Public
Forked from jinworks/CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
R GNU General Public License v3.0 UpdatedJul 2, 2025 -
ms2rescore Public
Forked from CompOmics/ms2rescoreModular and user-friendly platform for AI-assisted rescoring of peptide identifications
Python Apache License 2.0 UpdatedJun 25, 2025 -
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libplanc Public
Forked from welch-lab/libplancDistributed NMF/NTF Library
C++ Other UpdatedJun 23, 2025 -
RcppPlanc Public
Forked from welch-lab/RcppPlancC++ GNU General Public License v2.0 UpdatedJun 21, 2025 -
MCuNovo Public
Select best protein codeing genes from models Generated from MAKER2, Cufflinks and any de novo assembling programs. Previously called MCOT, with this publication (http://www.sciencedirect.com/scien…
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ProHap Public
Forked from ProGenNo/ProHapProteogenomics database-generation tool for protein haplotypes and variants
Python MIT License UpdatedApr 21, 2025 -
ms2pip Public
Forked from CompOmics/ms2pipMS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
HTML Apache License 2.0 UpdatedMar 12, 2025 -
gpt_academic Public
Forked from binary-husky/gpt_academic为ChatGPT/GLM提供实用化交互界面，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm2等本地模型。兼容文心一言, moss, llama2, rwkv, claude2, 通义千问, 书生, 讯飞星火等。
Python GNU General Public License v3.0 UpdatedFeb 18, 2025 -
deimos Public
Forked from pnnl/deimosPython BSD 3-Clause "New" or "Revised" License UpdatedDec 19, 2024 -
panpop Public
Forked from starskyzheng/panpopApplication of pan-genome for population
Perl MIT License UpdatedJun 12, 2024 -
IQMMA Public
Forked from PostoenkoVI/IQMMAProject improves quantitative analysis by applying multiple feature detection tools and pick the best from their results.
Python Apache License 2.0 UpdatedApr 5, 2024 -
go-proxy-bingai Public
Forked from Harry-zklcdc/go-proxy-bingai用 Vue3 和 Go 搭建的微软 New Bing 演示站点，拥有一致的 UI 体验，支持 ChatGPT 提示词，国内可用。
HTML MIT License UpdatedMar 12, 2024 -
safepy Public
Forked from baryshnikova-lab/safepyPython implementation of Spatial Analysis of Functional Enrichment (SAFE)
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3D-MSNet Public
Forked from CSi-Studio/3D-MSNetA point cloud based deep learning model for untargeted feature detection and quantification in profile LC-HRMS data
Python Other UpdatedAug 28, 2023 -
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TagGraph Public
Forked from miwi1/TagGraphFork of TagGraph project, from https://sourceforge.net/projects/taggraph/
C++ UpdatedMar 28, 2023
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