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36 stars written in Jupyter Notebook
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LLM-powered multiagent persona simulation for imagination enhancement and business insights.

Jupyter Notebook 7,380 650 Updated Mar 28, 2026

JAX implementation of OpenAI's Whisper model for up to 70x speed-up on TPU.

Jupyter Notebook 4,685 413 Updated Apr 3, 2024

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

Jupyter Notebook 3,183 1,693 Updated Nov 10, 2025

A central, open resource for data and tools related to chain-of-thought reasoning in large language models. Developed @ Samwald research group: https://samwald.info/

Jupyter Notebook 1,013 81 Updated Dec 16, 2024

Library for clinical NLP with spaCy.

Jupyter Notebook 645 109 Updated Mar 31, 2026

AI model evaluation with a focus on healthcare

Jupyter Notebook 258 44 Updated Feb 18, 2026

Test-time preferenece optimization (ICML 2025).

Jupyter Notebook 182 11 Updated May 8, 2025

Work on using Retrieval-Augmented Generation (RAG) to combine Fast Healthcare Interoperable Resources (FHIR) with Generative AI.

Jupyter Notebook 112 36 Updated Apr 2, 2024

The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…

Jupyter Notebook 92 12 Updated Apr 3, 2026

A Python Natural Language Processing Toolkit for Medical Text Generation

Jupyter Notebook 82 12 Updated May 24, 2025

Self-verification for LLMs.

Jupyter Notebook 67 10 Updated Jul 22, 2023

A version of MIMIC-IV in FHIR

Jupyter Notebook 54 21 Updated Oct 28, 2024

An OCR project to extract information about patient and prescription details.

Jupyter Notebook 42 14 Updated Jul 26, 2025

[NeurIPS 2022] Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions"

Jupyter Notebook 37 7 Updated Jul 28, 2024

Clinical charting tool for physicians. Automatically generates structured SOAP notes from telehealth appointment recordings or clinical audio memos.

Jupyter Notebook 35 8 Updated Sep 17, 2024

Parameter-efficient Fine Tuning for Clinical LLMs

Jupyter Notebook 17 2 Updated Apr 23, 2024

Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work

Jupyter Notebook 14 7 Updated Jan 10, 2021

Basic entity linker for the SNOMED EL Challenge

Jupyter Notebook 14 5 Updated Jan 22, 2024

A Python Natural Language Processing Toolkit for Electronic Health Record Texts

Jupyter Notebook 13 13 Updated May 24, 2023

Creates a concept graph from a SNOMED CT release

Jupyter Notebook 12 10 Updated Nov 27, 2025

[JAMIA 2024] A dataset and benchmark for hospital course summarization with adapted large language models

Jupyter Notebook 10 2 Updated May 24, 2025

Medical coding using Vertex AI

Jupyter Notebook 9 3 Updated Dec 11, 2023

A quick tutorial for using spaCy Layout.

Jupyter Notebook 9 4 Updated Jan 14, 2025

Contribution to the LabLabAI AI Challenge Hackathon October 2023

Jupyter Notebook 7 5 Updated Oct 16, 2023

A collection of applications that can be used with Large Language Models (LLMs).

Jupyter Notebook 6 Updated Jul 19, 2024

AI Researcher for Students and Research Professionals

Jupyter Notebook 4 4 Updated Feb 12, 2025
Jupyter Notebook 3 1 Updated Apr 15, 2025

Contains my experiments for ZS's hiring hackathon (II).

Jupyter Notebook 3 2 Updated Apr 18, 2019

We have to identify specific clinical concepts in `patient notes` and develop and automated method to map clinical concepts from an excam rubic.

Jupyter Notebook 2 Updated Feb 18, 2022
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