HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Model and predict short DNA sequence features with neural networks

Misassembly Identifier

general purpose library for sequence manipulation

Tool Shed repositories maintained by the Intergalactic Utilities Commission

A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data

Scripts used for the VGP telomere manuscript.

Scripts used for the H9 assembly manuscript.

LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

🧬 gget enables efficient querying of genomic reference databases

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Synteny and Rearrangement Identifier

A bioinformatics toolset for multiomic analysis

Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.

Zotero addon to automatically fetch TL;DR from Sematic scholar for items.

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Computational suite for analyzing chromosomes and centromeres based on distance values between DNA motifs

A genome completeness evaluation tool based on miniprot

🎓 Path to a free self-taught education in Computer Science!

Interactive roadmaps, guides and other educational content to help developers grow in their careers.

📚 Freely available programming books

Collection of various algorithms in mathematics, machine learning, computer science and physics implemented in C++ for educational purposes.

Collaborative Collection of C++ Best Practices. This online resource is part of Jason Turner's collection of C++ Best Practices resources. See README.md for more information.

A curated list of awesome C++ (or C) frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.

This analysis aims to detect convergent variants among species from polyphyletic clades at amino acid, codon, and nucleotide levels

FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs

TEtrimmer: a novel tool to automate manual curation of transposable elements