Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- molmo-glancer-capsule Public
AllenNeuralDynamics/molmo-glancer-capsule’s past year of commit activity - segmentation-skeleton-metrics Public
A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity - aind-beh-ephys-analysis Public
AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity - aind-software-docs Public
Centralized documentation repository for Scientific Computing, publishes to RTD
AllenNeuralDynamics/aind-software-docs’s past year of commit activity - hcr-integrated-qc-capsule Public
Performs integrated quality control for a complete HCR experiment by combining ROI shape metrics, pairwise unmixing outputs, and cell typing results into a single QC output. Unlike round-specific processing steps, this capsule evaluates the full multi-round dataset togethe.
AllenNeuralDynamics/hcr-integrated-qc-capsule’s past year of commit activity - hcr-quick-viewer Public
Just a simple panel app to check on png from integrated datasets QC capsules
AllenNeuralDynamics/hcr-quick-viewer’s past year of commit activity
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