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@AnantharamanLab

Anantharaman Microbiome Lab at UW-Madison

Software and Databases developed by the Anantharaman Lab

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  1. protein_set_transformer protein_set_transformer Public

    Forked from cody-mar10/protein_set_transformer

    Protein Set Transformer (PST) framework for training protein-language-model-based genome language models. Inference is possible for viral genomes using our pretrained viral foundation model.

    Jupyter Notebook 11 2

  2. vRhyme vRhyme Public

    Binning Virus Genomes from Metagenomes

    Python 68 11

  3. VIBRANT VIBRANT Public

    Virus Identification By iteRative ANnoTation

    Python 180 38

  4. PropagAtE PropagAtE Public

    Prophage Activity Estimator

    Python 29 3

  5. METABOLIC METABOLIC Public

    A scalable high-throughput metabolic and biogeochemical functional trait profiler

    Perl 209 51

  6. vClassifier vClassifier Public

    Species-level taxonomic classification of viruses

    Shell 4

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