Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes

Comebin: a contrastive-learning based metagenomic binner, is engineered to do plastid MAG clustering.

Vanjari is a tool for the classification of viruses using neural networks. Now we modify it to target plastids.

Example Git repository with Python code to calculate GC content of a FASTA file.

Here binny is modified to fit the database of chloroplast genome to cluster chloroplast contigs.

Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (plastid MAGs) through strategic coassembly

The binning tool with dynamic contrastive learning and deep language model, with some features engineered for encountering plastid MAG recovery.