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1. bacterial-NGS-data-analysis bacterial-NGS-data-analysis Public

   Developed a Bash-based pipeline for bacterial NGS data analysis, including QC, trimming, alignment, variant calling, and annotation (FastQC, Trimmomatic, BWA, Samtools, bcftools, SnpEff).

   Shell

2. DeSeq2-analysis-and-GSEA DeSeq2-analysis-and-GSEA Public

   This project focuses on finding differentially expressed genes in granulosa cells (PCOS vs normal) using DeSeq2 and performing GSEA to identify the pathways that are upregulated or downregulated in…

   R

3. Deseq2-analysis-and-annotation-using-GO-and-KEGG Deseq2-analysis-and-annotation-using-GO-and-KEGG Public

   This project involves differential gene analysis of Granulosa cells (PCOS vs Control),Visualisation using Volcano Plot and annotation using GO and KEGG

   R

4. GATK GATK Public

   Implemented a Bash-based pipeline for human genome variant analysis using pre-aligned NA12878 data, performing duplicate marking, base recalibration, variant calling, filtration, and annotation wit…

   Shell

5. Seurat-scRNA-seq Seurat-scRNA-seq Public

   This project focuses on single cell RNA sequencing analysis- quality control, filtering, dimentionality reduction, integration(seurat & harmony), and finding markers.

   R

6. DeSeq2-Nextflow DeSeq2-Nextflow Public

   This project includes automation of Differential Gene Expression Analysis (DeSeq2) using Nextflow. A simple project that yields an excel file containing the significant diferentially expressed gene…

   Nextflow