Hi
I am running a non standard genome and I am running into some issues.
Managed to make the sparse matrix but had to patch already the identifier being @ instead of _ for the tmp files as I have _ in my contig names.
HIFI/src/HIFI output/example.ptg000008l_1_ptg000080l_1.RF.tsv out2
HIFI version 1.0
option -method=
option -fragmentsPerBin= 1
option -kdeMinCount = 50
option -kdeBandwidth = 20.000000
option -kdeMaxBandwidth = 25.000000
option -mrfMaxIter = 5
option -minSigma = 0.001000
option -sigmaMultiplier = 0.040000
option -minSigma = 0.001000
option -firstRow = -1
option -lastRow = -1
option -firstCol = -1
option -lastCol = -1
option -boundaryKS = 2.000000
option -minOutput = 0.000010
option -outputNotNormalized = 0
option -bandSize = 99999999
Reading matrix
ERROR2: Setting element outside matrix i=442 j=343 5 291277 442 12124
I added the file (with txt extension) to help in the debugging.
Might that be again a problem with the underscore hard-coded somewhere ?
example.ptg000008l_1_ptg000080l_1.RF.txt
Hi
I am running a non standard genome and I am running into some issues.
Managed to make the sparse matrix but had to patch already the identifier being
@instead of_for the tmp files as I have_in my contig names.I added the file (with txt extension) to help in the debugging.
Might that be again a problem with the underscore hard-coded somewhere ?
example.ptg000008l_1_ptg000080l_1.RF.txt